Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12860

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12850 and ABID97_RS12855 are separated by 35 nucleotidesABID97_RS12855 and ABID97_RS12860 overlap by 4 nucleotidesABID97_RS12860 and ABID97_RS12865 are separated by 0 nucleotidesABID97_RS12865 and ABID97_RS12870 overlap by 4 nucleotides ABID97_RS12850: ABID97_RS12850 - ribulose bisphosphate carboxylase small subunit, at 2,663,732 to 2,664,151 _RS12850 ABID97_RS12855: ABID97_RS12855 - CbbX protein, at 2,664,187 to 2,665,101 _RS12855 ABID97_RS12860: ABID97_RS12860 - HAD-IA family hydrolase, at 2,665,098 to 2,665,901 _RS12860 ABID97_RS12865: ABID97_RS12865 - ribulose-phosphate 3-epimerase, at 2,665,902 to 2,666,606 _RS12865 ABID97_RS12870: ABID97_RS12870 - HAD-IA family hydrolase, at 2,666,603 to 2,667,331 _RS12870 Position (kb) 2665 2666Strain fitness (log2 ratio) -2 -1 0 1at 2664.114 kb on - strandat 2664.616 kb on + strand, within ABID97_RS12855at 2664.806 kb on - strand, within ABID97_RS12855at 2665.272 kb on + strand, within ABID97_RS12860at 2665.900 kb on - strandat 2666.037 kb on + strand, within ABID97_RS12865

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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2,664,114 - -1.2
2,664,616 + ABID97_RS12855 0.47 -1.7
2,664,806 - ABID97_RS12855 0.68 -2.3
2,665,272 + ABID97_RS12860 0.22 -1.7
2,665,900 - -2.1
2,666,037 + ABID97_RS12865 0.19 -1.2

Or see this region's nucleotide sequence