Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07580

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07565 and ABID97_RS07570 are separated by 9 nucleotidesABID97_RS07570 and ABID97_RS07575 overlap by 4 nucleotidesABID97_RS07575 and ABID97_RS07580 are separated by 11 nucleotidesABID97_RS07580 and ABID97_RS07585 overlap by 4 nucleotidesABID97_RS07585 and ABID97_RS07590 overlap by 4 nucleotides ABID97_RS07565: ABID97_RS07565 - formate dehydrogenase subunit alpha, at 1,597,249 to 1,600,239 _RS07565 ABID97_RS07570: ABID97_RS07570 - formate dehydrogenase FDH3 subunit beta, at 1,600,249 to 1,600,872 _RS07570 ABID97_RS07575: ABID97_RS07575 - hypothetical protein, at 1,600,869 to 1,601,123 _RS07575 ABID97_RS07580: ABID97_RS07580 - formate dehydrogenase subunit gamma, at 1,601,135 to 1,602,352 _RS07580 ABID97_RS07585: ABID97_RS07585 - hypothetical protein, at 1,602,349 to 1,602,756 _RS07585 ABID97_RS07590: ABID97_RS07590 - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,602,753 to 1,603,628 _RS07590 Position (kb) 1601 1602 1603Strain fitness (log2 ratio) -1 0 1 2 3at 1600.171 kb on + strandat 1600.172 kb on - strandat 1600.172 kb on - strandat 1600.178 kb on - strandat 1600.238 kb on - strandat 1600.466 kb on - strand, within ABID97_RS07570at 1600.531 kb on + strand, within ABID97_RS07570at 1600.532 kb on - strand, within ABID97_RS07570at 1600.532 kb on - strand, within ABID97_RS07570at 1601.106 kb on + strandat 1601.331 kb on - strand, within ABID97_RS07580at 1601.553 kb on - strand, within ABID97_RS07580at 1601.600 kb on + strand, within ABID97_RS07580at 1601.600 kb on + strand, within ABID97_RS07580at 1601.600 kb on + strand, within ABID97_RS07580at 1601.600 kb on + strand, within ABID97_RS07580at 1601.601 kb on - strand, within ABID97_RS07580at 1601.601 kb on - strand, within ABID97_RS07580at 1602.069 kb on + strand, within ABID97_RS07580at 1602.069 kb on - strand, within ABID97_RS07580at 1602.069 kb on - strand, within ABID97_RS07580at 1602.070 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.152 kb on + strand, within ABID97_RS07580at 1602.245 kb on + strandat 1602.245 kb on + strandat 1602.505 kb on + strand, within ABID97_RS07585at 1602.506 kb on - strand, within ABID97_RS07585at 1602.506 kb on - strand, within ABID97_RS07585at 1602.506 kb on - strand, within ABID97_RS07585at 1602.891 kb on + strand, within ABID97_RS07590at 1602.891 kb on + strand, within ABID97_RS07590at 1602.892 kb on - strand, within ABID97_RS07590at 1603.194 kb on + strand, within ABID97_RS07590at 1603.194 kb on + strand, within ABID97_RS07590at 1603.195 kb on - strand, within ABID97_RS07590at 1603.195 kb on - strand, within ABID97_RS07590at 1603.195 kb on - strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.233 kb on + strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590at 1603.234 kb on - strand, within ABID97_RS07590

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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1,600,171 + +0.3
1,600,172 - +0.9
1,600,172 - -0.1
1,600,178 - +1.7
1,600,238 - -0.2
1,600,466 - ABID97_RS07570 0.35 -0.2
1,600,531 + ABID97_RS07570 0.45 -0.0
1,600,532 - ABID97_RS07570 0.45 +1.0
1,600,532 - ABID97_RS07570 0.45 -0.1
1,601,106 + +0.2
1,601,331 - ABID97_RS07580 0.16 +0.7
1,601,553 - ABID97_RS07580 0.34 +0.1
1,601,600 + ABID97_RS07580 0.38 +0.4
1,601,600 + ABID97_RS07580 0.38 +0.7
1,601,600 + ABID97_RS07580 0.38 -0.1
1,601,600 + ABID97_RS07580 0.38 -0.3
1,601,601 - ABID97_RS07580 0.38 -0.4
1,601,601 - ABID97_RS07580 0.38 -0.1
1,602,069 + ABID97_RS07580 0.77 -0.4
1,602,069 - ABID97_RS07580 0.77 -0.2
1,602,069 - ABID97_RS07580 0.77 +0.5
1,602,070 + ABID97_RS07580 0.77 -0.6
1,602,152 + ABID97_RS07580 0.83 -0.2
1,602,152 + ABID97_RS07580 0.83 +0.1
1,602,152 + ABID97_RS07580 0.83 +0.3
1,602,152 + ABID97_RS07580 0.83 +0.1
1,602,152 + ABID97_RS07580 0.83 +0.1
1,602,152 + ABID97_RS07580 0.83 +0.5
1,602,245 + -1.2
1,602,245 + +0.2
1,602,505 + ABID97_RS07585 0.38 -0.0
1,602,506 - ABID97_RS07585 0.38 +0.4
1,602,506 - ABID97_RS07585 0.38 -0.4
1,602,506 - ABID97_RS07585 0.38 -0.1
1,602,891 + ABID97_RS07590 0.16 +0.3
1,602,891 + ABID97_RS07590 0.16 -0.6
1,602,892 - ABID97_RS07590 0.16 -0.1
1,603,194 + ABID97_RS07590 0.50 +0.2
1,603,194 + ABID97_RS07590 0.50 -0.4
1,603,195 - ABID97_RS07590 0.50 +1.0
1,603,195 - ABID97_RS07590 0.50 +0.2
1,603,195 - ABID97_RS07590 0.50 +0.5
1,603,233 + ABID97_RS07590 0.55 -0.2
1,603,233 + ABID97_RS07590 0.55 +2.8
1,603,233 + ABID97_RS07590 0.55 -0.1
1,603,233 + ABID97_RS07590 0.55 +1.2
1,603,234 - ABID97_RS07590 0.55 +0.9
1,603,234 - ABID97_RS07590 0.55 +0.6
1,603,234 - ABID97_RS07590 0.55 +0.2
1,603,234 - ABID97_RS07590 0.55 +0.1
1,603,234 - ABID97_RS07590 0.55 +0.7

Or see this region's nucleotide sequence