Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03275

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03270 and ABID97_RS03275 are separated by 0 nucleotidesABID97_RS03275 and ABID97_RS03280 overlap by 58 nucleotides ABID97_RS03270: ABID97_RS03270 - LacI family DNA-binding transcriptional regulator, at 661,882 to 662,913 _RS03270 ABID97_RS03275: ABID97_RS03275 - hypothetical protein, at 662,914 to 663,429 _RS03275 ABID97_RS03280: ABID97_RS03280 - hypothetical protein, at 663,372 to 664,613 _RS03280 Position (kb) 662 663 664Strain fitness (log2 ratio) -1 0 1at 662.560 kb on + strand, within ABID97_RS03270at 662.561 kb on - strand, within ABID97_RS03270at 662.561 kb on - strand, within ABID97_RS03270at 662.561 kb on - strand, within ABID97_RS03270at 662.708 kb on - strand, within ABID97_RS03270at 663.033 kb on - strand, within ABID97_RS03275at 663.033 kb on - strand, within ABID97_RS03275at 663.378 kb on - strandat 663.820 kb on + strand, within ABID97_RS03280at 663.863 kb on - strand, within ABID97_RS03280

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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662,560 + ABID97_RS03270 0.66 +0.1
662,561 - ABID97_RS03270 0.66 -1.2
662,561 - ABID97_RS03270 0.66 -0.2
662,561 - ABID97_RS03270 0.66 -0.1
662,708 - ABID97_RS03270 0.80 +0.4
663,033 - ABID97_RS03275 0.23 -1.1
663,033 - ABID97_RS03275 0.23 -1.1
663,378 - -0.8
663,820 + ABID97_RS03280 0.36 -1.2
663,863 - ABID97_RS03280 0.40 -0.1

Or see this region's nucleotide sequence