Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00770 and ABID97_RS00775 are separated by 4 nucleotides ABID97_RS00775 and ABID97_RS00780 are separated by 46 nucleotides ABID97_RS00780 and ABID97_RS00785 overlap by 4 nucleotides
ABID97_RS00770: ABID97_RS00770 - long-chain fatty acid--CoA ligase, at 151,848 to 153,731
_RS00770
ABID97_RS00775: ABID97_RS00775 - ABC transporter ATP-binding protein, at 153,736 to 154,509
_RS00775
ABID97_RS00780: ABID97_RS00780 - ABC transporter ATP-binding protein, at 154,556 to 155,374
_RS00780
ABID97_RS00785: ABID97_RS00785 - branched-chain amino acid ABC transporter permease, at 155,371 to 156,447
_RS00785
Position (kb) 154
155
156 Strain fitness (log2 ratio) -1
0
1 at 153.881 kb on + strand, within ABID97_RS00775 at 154.140 kb on - strand, within ABID97_RS00775 at 154.145 kb on + strand, within ABID97_RS00775 at 154.193 kb on + strand, within ABID97_RS00775 at 154.193 kb on + strand, within ABID97_RS00775 at 154.283 kb on + strand, within ABID97_RS00775 at 154.284 kb on - strand, within ABID97_RS00775 at 154.498 kb on + strand at 154.603 kb on - strand at 155.206 kb on - strand, within ABID97_RS00780 at 155.525 kb on + strand, within ABID97_RS00785 at 155.795 kb on + strand, within ABID97_RS00785 at 155.933 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.199 kb on - strand, within ABID97_RS00785 at 156.200 kb on + strand, within ABID97_RS00785 at 156.200 kb on + strand, within ABID97_RS00785 at 156.201 kb on - strand, within ABID97_RS00785 at 156.201 kb on - strand, within ABID97_RS00785 at 156.323 kb on + strand, within ABID97_RS00785
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 153,881 + ABID97_RS00775 0.19 -0.4 154,140 - ABID97_RS00775 0.52 +1.5 154,145 + ABID97_RS00775 0.53 +1.6 154,193 + ABID97_RS00775 0.59 -0.3 154,193 + ABID97_RS00775 0.59 -0.1 154,283 + ABID97_RS00775 0.71 -0.1 154,284 - ABID97_RS00775 0.71 +0.1 154,498 + +0.8 154,603 - +0.4 155,206 - ABID97_RS00780 0.79 -1.4 155,525 + ABID97_RS00785 0.14 -0.2 155,795 + ABID97_RS00785 0.39 -0.3 155,933 + ABID97_RS00785 0.52 -0.9 156,077 + ABID97_RS00785 0.66 -0.0 156,077 + ABID97_RS00785 0.66 +0.2 156,077 + ABID97_RS00785 0.66 -0.1 156,077 + ABID97_RS00785 0.66 -0.0 156,077 + ABID97_RS00785 0.66 -0.3 156,078 - ABID97_RS00785 0.66 +0.5 156,078 - ABID97_RS00785 0.66 -0.9 156,078 - ABID97_RS00785 0.66 -0.1 156,078 - ABID97_RS00785 0.66 +0.1 156,199 - ABID97_RS00785 0.77 -0.1 156,200 + ABID97_RS00785 0.77 -0.3 156,200 + ABID97_RS00785 0.77 +0.2 156,201 - ABID97_RS00785 0.77 -0.2 156,201 - ABID97_RS00785 0.77 +1.2 156,323 + ABID97_RS00785 0.88 -0.6
Or see this region's nucleotide sequence