Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS22765

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS22755 and UW163_RS22760 are separated by 14 nucleotidesUW163_RS22760 and UW163_RS22765 are separated by 216 nucleotidesUW163_RS22765 and UW163_RS22770 are separated by 35 nucleotides UW163_RS22755: UW163_RS22755 - siderophore-interacting protein, at 1,709,138 to 1,709,971 _RS22755 UW163_RS22760: UW163_RS22760 - hypothetical protein, at 1,709,986 to 1,710,240 _RS22760 UW163_RS22765: UW163_RS22765 - methyl-accepting chemotaxis protein, at 1,710,457 to 1,712,046 _RS22765 UW163_RS22770: UW163_RS22770 - sensor domain-containing diguanylate cyclase, at 1,712,082 to 1,715,618 _RS22770 Position (kb) 1710 1711 1712 1713Strain fitness (log2 ratio) -2 -1 0 1 2at 1709.694 kb on + strand, within UW163_RS22755at 1709.695 kb on - strand, within UW163_RS22755at 1709.695 kb on - strand, within UW163_RS22755at 1709.695 kb on - strand, within UW163_RS22755at 1709.987 kb on + strandat 1710.053 kb on + strand, within UW163_RS22760at 1710.053 kb on + strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.470 kb on + strandat 1710.471 kb on - strandat 1710.511 kb on + strandat 1710.512 kb on - strandat 1710.733 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.845 kb on - strand, within UW163_RS22765at 1710.845 kb on - strand, within UW163_RS22765at 1710.874 kb on + strand, within UW163_RS22765at 1710.874 kb on + strand, within UW163_RS22765at 1710.875 kb on - strand, within UW163_RS22765at 1711.474 kb on - strand, within UW163_RS22765at 1712.084 kb on - strandat 1712.152 kb on + strandat 1712.152 kb on + strandat 1712.152 kb on + strandat 1712.152 kb on + strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.153 kb on - strandat 1712.155 kb on + strandat 1712.155 kb on + strandat 1712.156 kb on - strandat 1712.156 kb on - strandat 1712.156 kb on - strandat 1712.359 kb on + strandat 1712.360 kb on - strandat 1712.360 kb on - strandat 1712.374 kb on + strandat 1712.374 kb on + strandat 1712.575 kb on - strand, within UW163_RS22770at 1712.803 kb on + strand, within UW163_RS22770at 1712.804 kb on - strand, within UW163_RS22770at 1712.804 kb on - strand, within UW163_RS22770at 1712.932 kb on + strand, within UW163_RS22770at 1712.932 kb on + strand, within UW163_RS22770at 1712.935 kb on + strandat 1712.935 kb on + strand, within UW163_RS22770at 1712.935 kb on + strand, within UW163_RS22770at 1712.936 kb on - strand, within UW163_RS22770at 1712.936 kb on - strand, within UW163_RS22770at 1712.936 kb on - strand, within UW163_RS22770

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,709,694 + UW163_RS22755 0.67 -0.3
1,709,695 - UW163_RS22755 0.67 -0.7
1,709,695 - UW163_RS22755 0.67 -0.4
1,709,695 - UW163_RS22755 0.67 +0.1
1,709,987 + -1.0
1,710,053 + UW163_RS22760 0.26 +1.4
1,710,053 + UW163_RS22760 0.26 -0.4
1,710,054 - UW163_RS22760 0.27 +0.1
1,710,054 - UW163_RS22760 0.27 +0.4
1,710,054 - UW163_RS22760 0.27 +0.8
1,710,054 - UW163_RS22760 0.27 +0.0
1,710,470 + +0.1
1,710,471 - -0.6
1,710,511 + -1.0
1,710,512 - -0.3
1,710,733 + UW163_RS22765 0.17 +1.1
1,710,844 + UW163_RS22765 0.24 -0.3
1,710,844 + UW163_RS22765 0.24 +0.1
1,710,844 + UW163_RS22765 0.24 -0.6
1,710,844 + UW163_RS22765 0.24 -0.1
1,710,845 - UW163_RS22765 0.24 -0.2
1,710,845 - UW163_RS22765 0.24 -0.7
1,710,874 + UW163_RS22765 0.26 -0.2
1,710,874 + UW163_RS22765 0.26 -0.3
1,710,875 - UW163_RS22765 0.26 -0.3
1,711,474 - UW163_RS22765 0.64 -0.1
1,712,084 - -0.9
1,712,152 + +0.2
1,712,152 + +0.8
1,712,152 + -0.4
1,712,152 + +0.9
1,712,153 - +0.0
1,712,153 - +1.6
1,712,153 - +0.0
1,712,153 - +0.2
1,712,153 - +0.1
1,712,153 - -0.9
1,712,153 - -0.3
1,712,153 - -0.5
1,712,155 + +1.8
1,712,155 + +0.2
1,712,156 - -0.1
1,712,156 - -0.6
1,712,156 - -1.2
1,712,359 + +2.6
1,712,360 - -0.4
1,712,360 - -0.5
1,712,374 + -1.1
1,712,374 + -0.2
1,712,575 - UW163_RS22770 0.14 -0.5
1,712,803 + UW163_RS22770 0.20 +2.4
1,712,804 - UW163_RS22770 0.20 -0.4
1,712,804 - UW163_RS22770 0.20 +0.1
1,712,932 + UW163_RS22770 0.24 +0.5
1,712,932 + UW163_RS22770 0.24 -0.4
1,712,935 + +1.6
1,712,935 + UW163_RS22770 0.24 -0.1
1,712,935 + UW163_RS22770 0.24 -0.5
1,712,936 - UW163_RS22770 0.24 -2.3
1,712,936 - UW163_RS22770 0.24 +0.5
1,712,936 - UW163_RS22770 0.24 -0.2

Or see this region's nucleotide sequence