Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS20310

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS20305 and UW163_RS20310 are separated by 303 nucleotidesUW163_RS20310 and UW163_RS20315 are separated by 502 nucleotidesUW163_RS20315 and UW163_RS20320 are separated by 21 nucleotides UW163_RS20305: UW163_RS20305 - LysR family transcriptional regulator, at 1,073,944 to 1,074,804 _RS20305 UW163_RS20310: UW163_RS20310 - DNA-binding protein, at 1,075,108 to 1,075,359 _RS20310 UW163_RS20315: UW163_RS20315 - DUF2282 domain-containing protein, at 1,075,862 to 1,076,131 _RS20315 UW163_RS20320: UW163_RS20320 - DUF692 domain-containing protein, at 1,076,153 to 1,077,031 _RS20320 Position (kb) 1075 1076Strain fitness (log2 ratio) -1 0 1at 1075.093 kb on + strandat 1075.093 kb on + strandat 1075.102 kb on + strandat 1075.102 kb on + strandat 1075.102 kb on + strandat 1075.102 kb on + strandat 1075.103 kb on - strandat 1075.103 kb on - strandat 1075.253 kb on - strand, within UW163_RS20310at 1075.634 kb on - strandat 1075.634 kb on - strandat 1076.129 kb on + strandat 1076.130 kb on - strandat 1076.130 kb on - strandat 1076.273 kb on + strand, within UW163_RS20320at 1076.274 kb on - strand, within UW163_RS20320at 1076.274 kb on - strand, within UW163_RS20320at 1076.337 kb on + strand, within UW163_RS20320

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,075,093 + -0.3
1,075,093 + -0.8
1,075,102 + +0.1
1,075,102 + -0.9
1,075,102 + +0.1
1,075,102 + +0.8
1,075,103 - +0.2
1,075,103 - +1.6
1,075,253 - UW163_RS20310 0.58 +0.4
1,075,634 - +0.4
1,075,634 - +0.2
1,076,129 + -0.4
1,076,130 - -0.9
1,076,130 - +0.4
1,076,273 + UW163_RS20320 0.14 +0.0
1,076,274 - UW163_RS20320 0.14 -0.0
1,076,274 - UW163_RS20320 0.14 -0.6
1,076,337 + UW163_RS20320 0.21 -1.1

Or see this region's nucleotide sequence