Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS18600

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS18590 and UW163_RS18595 are separated by 30 nucleotidesUW163_RS18595 and UW163_RS18600 are separated by 112 nucleotidesUW163_RS18600 and UW163_RS18605 are separated by 74 nucleotidesUW163_RS18605 and UW163_RS18610 are separated by 70 nucleotides UW163_RS18590: UW163_RS18590 - DUF2784 domain-containing protein, at 576,075 to 576,443 _RS18590 UW163_RS18595: UW163_RS18595 - transcriptional regulator, at 576,474 to 576,905 _RS18595 UW163_RS18600: UW163_RS18600 - FMN-dependent NADH-azoreductase, at 577,018 to 577,638 _RS18600 UW163_RS18605: UW163_RS18605 - TetR/AcrR family transcriptional regulator, at 577,713 to 578,330 _RS18605 UW163_RS18610: UW163_RS18610 - cysteine dioxygenase, at 578,401 to 579,003 _RS18610 Position (kb) 577 578Strain fitness (log2 ratio) -2 -1 0 1at 576.133 kb on + strand, within UW163_RS18590at 576.134 kb on - strand, within UW163_RS18590at 576.166 kb on + strand, within UW163_RS18590at 576.166 kb on + strand, within UW163_RS18590at 576.166 kb on + strand, within UW163_RS18590at 576.167 kb on - strand, within UW163_RS18590at 576.167 kb on - strand, within UW163_RS18590at 576.167 kb on - strand, within UW163_RS18590at 576.169 kb on + strand, within UW163_RS18590at 576.169 kb on + strand, within UW163_RS18590at 576.169 kb on + strand, within UW163_RS18590at 576.170 kb on - strand, within UW163_RS18590at 576.799 kb on + strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.882 kb on + strandat 576.883 kb on - strandat 576.929 kb on - strandat 576.941 kb on + strandat 576.941 kb on + strandat 576.941 kb on + strandat 576.941 kb on + strandat 576.942 kb on - strandat 576.942 kb on - strandat 576.972 kb on - strandat 576.972 kb on - strandat 576.973 kb on + strandat 576.974 kb on - strandat 576.982 kb on + strandat 577.003 kb on + strandat 577.003 kb on + strandat 577.004 kb on - strandat 577.125 kb on + strand, within UW163_RS18600at 577.168 kb on - strand, within UW163_RS18600at 577.168 kb on - strand, within UW163_RS18600at 577.180 kb on + strand, within UW163_RS18600at 577.378 kb on + strand, within UW163_RS18600at 577.378 kb on + strand, within UW163_RS18600at 577.379 kb on - strand, within UW163_RS18600at 577.481 kb on - strand, within UW163_RS18600at 577.492 kb on + strand, within UW163_RS18600at 577.714 kb on + strandat 577.783 kb on + strand, within UW163_RS18605at 577.888 kb on + strand, within UW163_RS18605at 577.970 kb on + strand, within UW163_RS18605at 577.972 kb on + strand, within UW163_RS18605at 577.972 kb on + strand, within UW163_RS18605at 577.972 kb on + strand, within UW163_RS18605at 577.972 kb on + strand, within UW163_RS18605at 577.972 kb on + strand, within UW163_RS18605at 577.973 kb on - strand, within UW163_RS18605at 577.973 kb on - strand, within UW163_RS18605at 577.973 kb on - strand, within UW163_RS18605at 578.173 kb on + strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.174 kb on - strand, within UW163_RS18605at 578.176 kb on + strand, within UW163_RS18605at 578.177 kb on - strand, within UW163_RS18605at 578.183 kb on - strand, within UW163_RS18605at 578.242 kb on + strand, within UW163_RS18605at 578.242 kb on + strand, within UW163_RS18605at 578.242 kb on + strand, within UW163_RS18605at 578.243 kb on - strand, within UW163_RS18605at 578.243 kb on - strand, within UW163_RS18605at 578.243 kb on - strand, within UW163_RS18605at 578.243 kb on - strand, within UW163_RS18605at 578.365 kb on - strandat 578.365 kb on - strandat 578.402 kb on + strandat 578.403 kb on - strandat 578.403 kb on - strandat 578.429 kb on + strandat 578.429 kb on + strandat 578.429 kb on + strandat 578.429 kb on + strandat 578.430 kb on - strandat 578.430 kb on - strandat 578.430 kb on - strandat 578.440 kb on + strandat 578.441 kb on + strandat 578.441 kb on + strandat 578.441 kb on + strandat 578.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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576,133 + UW163_RS18590 0.16 -0.0
576,134 - UW163_RS18590 0.16 -1.7
576,166 + UW163_RS18590 0.25 +0.7
576,166 + UW163_RS18590 0.25 -0.6
576,166 + UW163_RS18590 0.25 +0.1
576,167 - UW163_RS18590 0.25 -0.0
576,167 - UW163_RS18590 0.25 -0.5
576,167 - UW163_RS18590 0.25 +0.3
576,169 + UW163_RS18590 0.25 -0.1
576,169 + UW163_RS18590 0.25 -0.4
576,169 + UW163_RS18590 0.25 -0.9
576,170 - UW163_RS18590 0.26 +0.5
576,799 + UW163_RS18595 0.75 -1.0
576,800 - UW163_RS18595 0.75 -0.6
576,800 - UW163_RS18595 0.75 +0.5
576,800 - UW163_RS18595 0.75 +0.7
576,800 - UW163_RS18595 0.75 -0.2
576,882 + +0.4
576,883 - +0.1
576,929 - -0.1
576,941 + -0.6
576,941 + -0.5
576,941 + -0.4
576,941 + +1.0
576,942 - +0.8
576,942 - -0.1
576,972 - +0.2
576,972 - +0.3
576,973 + -0.7
576,974 - -0.8
576,982 + -1.5
577,003 + +0.0
577,003 + +0.1
577,004 - -0.2
577,125 + UW163_RS18600 0.17 -0.8
577,168 - UW163_RS18600 0.24 +0.2
577,168 - UW163_RS18600 0.24 -0.6
577,180 + UW163_RS18600 0.26 -0.1
577,378 + UW163_RS18600 0.58 -0.3
577,378 + UW163_RS18600 0.58 -0.2
577,379 - UW163_RS18600 0.58 -0.6
577,481 - UW163_RS18600 0.75 -0.3
577,492 + UW163_RS18600 0.76 -0.1
577,714 + -0.3
577,783 + UW163_RS18605 0.11 +0.4
577,888 + UW163_RS18605 0.28 -0.9
577,970 + UW163_RS18605 0.42 -0.5
577,972 + UW163_RS18605 0.42 +0.6
577,972 + UW163_RS18605 0.42 -0.6
577,972 + UW163_RS18605 0.42 -0.3
577,972 + UW163_RS18605 0.42 -0.2
577,972 + UW163_RS18605 0.42 -0.1
577,973 - UW163_RS18605 0.42 +0.6
577,973 - UW163_RS18605 0.42 -0.6
577,973 - UW163_RS18605 0.42 -0.2
578,173 + UW163_RS18605 0.74 -0.4
578,174 - UW163_RS18605 0.75 +1.2
578,174 - UW163_RS18605 0.75 +0.1
578,174 - UW163_RS18605 0.75 -0.1
578,174 - UW163_RS18605 0.75 +0.3
578,174 - UW163_RS18605 0.75 -1.3
578,174 - UW163_RS18605 0.75 +0.1
578,174 - UW163_RS18605 0.75 -0.5
578,174 - UW163_RS18605 0.75 -0.9
578,174 - UW163_RS18605 0.75 -1.1
578,176 + UW163_RS18605 0.75 +0.8
578,177 - UW163_RS18605 0.75 -0.7
578,183 - UW163_RS18605 0.76 -0.4
578,242 + UW163_RS18605 0.86 -0.0
578,242 + UW163_RS18605 0.86 -0.6
578,242 + UW163_RS18605 0.86 +0.4
578,243 - UW163_RS18605 0.86 +0.5
578,243 - UW163_RS18605 0.86 -0.9
578,243 - UW163_RS18605 0.86 -0.4
578,243 - UW163_RS18605 0.86 -0.2
578,365 - -1.4
578,365 - -2.1
578,402 + -0.1
578,403 - +0.8
578,403 - -0.2
578,429 + -0.4
578,429 + +0.3
578,429 + -1.1
578,429 + +0.9
578,430 - -0.6
578,430 - +0.7
578,430 - -0.0
578,440 + +0.1
578,441 + +0.2
578,441 + -0.3
578,441 + -0.3
578,442 - +1.1

Or see this region's nucleotide sequence