Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS14980

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS14975 and UW163_RS14980 are separated by 155 nucleotidesUW163_RS14980 and UW163_RS24715 are separated by 32 nucleotidesUW163_RS24715 and UW163_RS14985 are separated by 21 nucleotides UW163_RS14975: UW163_RS14975 - dihydrolipoyllysine-residue acetyltransferase, at 3,230,257 to 3,231,924 _RS14975 UW163_RS14980: UW163_RS14980 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 3,232,080 to 3,234,770 _RS14980 UW163_RS24715: UW163_RS24715 - hypothetical protein, at 3,234,803 to 3,235,064 _RS24715 UW163_RS14985: UW163_RS14985 - PAS domain-containing sensor histidine kinase, at 3,235,086 to 3,237,659 _RS14985 Position (kb) 3232 3233 3234 3235Strain fitness (log2 ratio) -2 -1 0 1at 3231.153 kb on - strandat 3231.994 kb on - strandat 3234.879 kb on - strand, within UW163_RS24715at 3235.060 kb on - strandat 3235.531 kb on - strand, within UW163_RS14985

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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3,231,153 - +1.6
3,231,994 - -1.1
3,234,879 - UW163_RS24715 0.29 -0.8
3,235,060 - -0.1
3,235,531 - UW163_RS14985 0.17 -2.2

Or see this region's nucleotide sequence