Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS12305 and UW163_RS12310 are separated by 77 nucleotides UW163_RS12310 and UW163_RS12315 are separated by 10 nucleotides UW163_RS12315 and UW163_RS12320 overlap by 4 nucleotides UW163_RS12320 and UW163_RS12325 overlap by 4 nucleotides
UW163_RS12305: UW163_RS12305 - DUF455 domain-containing protein, at 2,638,967 to 2,639,797
_RS12305
UW163_RS12310: UW163_RS12310 - alpha/beta hydrolase, at 2,639,875 to 2,640,792
_RS12310
UW163_RS12315: UW163_RS12315 - thiol-disulfide oxidoreductase DCC family protein, at 2,640,803 to 2,641,192
_RS12315
UW163_RS12320: UW163_RS12320 - DUF4166 domain-containing protein, at 2,641,189 to 2,641,731
_RS12320
UW163_RS12325: UW163_RS12325 - membrane protein, at 2,641,728 to 2,642,855
_RS12325
Position (kb)
2639
2640
2641 Strain fitness (log2 ratio)
-2
-1
0
1 at 2638.875 kb on + strand at 2639.322 kb on - strand, within UW163_RS12305 at 2639.699 kb on + strand, within UW163_RS12305 at 2639.795 kb on + strand at 2639.795 kb on + strand at 2639.923 kb on + strand at 2640.149 kb on - strand, within UW163_RS12310 at 2640.181 kb on + strand, within UW163_RS12310 at 2640.385 kb on + strand, within UW163_RS12310 at 2640.385 kb on + strand, within UW163_RS12310 at 2640.385 kb on + strand, within UW163_RS12310 at 2640.385 kb on + strand, within UW163_RS12310 at 2640.386 kb on - strand, within UW163_RS12310 at 2640.386 kb on - strand, within UW163_RS12310 at 2640.386 kb on - strand, within UW163_RS12310 at 2640.897 kb on + strand, within UW163_RS12315 at 2640.898 kb on - strand at 2641.065 kb on + strand, within UW163_RS12315 at 2641.441 kb on - strand, within UW163_RS12320 at 2641.441 kb on - strand, within UW163_RS12320
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 2,638,875 + +0.2 2,639,322 - UW163_RS12305 0.43 -0.2 2,639,699 + UW163_RS12305 0.88 -0.6 2,639,795 + +0.1 2,639,795 + +1.6 2,639,923 + -0.5 2,640,149 - UW163_RS12310 0.30 -0.8 2,640,181 + UW163_RS12310 0.33 +1.2 2,640,385 + UW163_RS12310 0.56 +0.1 2,640,385 + UW163_RS12310 0.56 -1.1 2,640,385 + UW163_RS12310 0.56 -0.4 2,640,385 + UW163_RS12310 0.56 -2.2 2,640,386 - UW163_RS12310 0.56 -0.1 2,640,386 - UW163_RS12310 0.56 -0.7 2,640,386 - UW163_RS12310 0.56 -0.5 2,640,897 + UW163_RS12315 0.24 +0.5 2,640,898 - +0.5 2,641,065 + UW163_RS12315 0.67 +0.6 2,641,441 - UW163_RS12320 0.46 -0.3 2,641,441 - UW163_RS12320 0.46 -0.2
Or see this region's nucleotide sequence