Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS11860 and UW163_RS11865 are separated by 3 nucleotides UW163_RS11865 and UW163_RS11870 are separated by 201 nucleotides UW163_RS11870 and UW163_RS11875 are separated by 115 nucleotides UW163_RS11875 and UW163_RS11880 are separated by 200 nucleotides
UW163_RS11860: UW163_RS11860 - S-adenosylmethionine-dependent methyltransferase, at 2,553,392 to 2,554,123
_RS11860
UW163_RS11865: UW163_RS11865 - septum formation protein Maf, at 2,554,127 to 2,554,723
_RS11865
UW163_RS11870: UW163_RS11870 - metal-binding protein, at 2,554,925 to 2,555,464
_RS11870
UW163_RS11875: UW163_RS11875 - 50S ribosomal protein L32, at 2,555,580 to 2,555,759
_RS11875
UW163_RS11880: UW163_RS11880 - phosphate acyltransferase PlsX, at 2,555,960 to 2,557,024
_RS11880
Position (kb)
2554
2555
2556 Strain fitness (log2 ratio)
-2
-1
0
1 at 2554.012 kb on - strand, within UW163_RS11860 at 2554.012 kb on - strand, within UW163_RS11860 at 2554.108 kb on - strand at 2554.128 kb on + strand at 2554.154 kb on - strand at 2554.296 kb on + strand, within UW163_RS11865 at 2554.297 kb on - strand, within UW163_RS11865 at 2554.723 kb on + strand at 2555.081 kb on - strand, within UW163_RS11870 at 2555.081 kb on - strand, within UW163_RS11870 at 2555.462 kb on + strand at 2555.498 kb on + strand at 2555.905 kb on + strand at 2555.905 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 2,554,012 - UW163_RS11860 0.85 +0.5 2,554,012 - UW163_RS11860 0.85 -0.2 2,554,108 - +0.2 2,554,128 + -1.4 2,554,154 - -1.8 2,554,296 + UW163_RS11865 0.28 +0.1 2,554,297 - UW163_RS11865 0.28 -0.1 2,554,723 + -0.1 2,555,081 - UW163_RS11870 0.29 +0.9 2,555,081 - UW163_RS11870 0.29 +0.5 2,555,462 + -0.3 2,555,498 + -0.8 2,555,905 + +0.6 2,555,905 + -1.0
Or see this region's nucleotide sequence