Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS11870

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS11860 and UW163_RS11865 are separated by 3 nucleotidesUW163_RS11865 and UW163_RS11870 are separated by 201 nucleotidesUW163_RS11870 and UW163_RS11875 are separated by 115 nucleotidesUW163_RS11875 and UW163_RS11880 are separated by 200 nucleotides UW163_RS11860: UW163_RS11860 - S-adenosylmethionine-dependent methyltransferase, at 2,553,392 to 2,554,123 _RS11860 UW163_RS11865: UW163_RS11865 - septum formation protein Maf, at 2,554,127 to 2,554,723 _RS11865 UW163_RS11870: UW163_RS11870 - metal-binding protein, at 2,554,925 to 2,555,464 _RS11870 UW163_RS11875: UW163_RS11875 - 50S ribosomal protein L32, at 2,555,580 to 2,555,759 _RS11875 UW163_RS11880: UW163_RS11880 - phosphate acyltransferase PlsX, at 2,555,960 to 2,557,024 _RS11880 Position (kb) 2554 2555 2556Strain fitness (log2 ratio) -2 -1 0 1at 2554.012 kb on - strand, within UW163_RS11860at 2554.012 kb on - strand, within UW163_RS11860at 2554.108 kb on - strandat 2554.128 kb on + strandat 2554.154 kb on - strandat 2554.296 kb on + strand, within UW163_RS11865at 2554.297 kb on - strand, within UW163_RS11865at 2554.723 kb on + strandat 2555.081 kb on - strand, within UW163_RS11870at 2555.081 kb on - strand, within UW163_RS11870at 2555.462 kb on + strandat 2555.498 kb on + strandat 2555.905 kb on + strandat 2555.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,554,012 - UW163_RS11860 0.85 +0.5
2,554,012 - UW163_RS11860 0.85 -0.2
2,554,108 - +0.2
2,554,128 + -1.4
2,554,154 - -1.8
2,554,296 + UW163_RS11865 0.28 +0.1
2,554,297 - UW163_RS11865 0.28 -0.1
2,554,723 + -0.1
2,555,081 - UW163_RS11870 0.29 +0.9
2,555,081 - UW163_RS11870 0.29 +0.5
2,555,462 + -0.3
2,555,498 + -0.8
2,555,905 + +0.6
2,555,905 + -1.0

Or see this region's nucleotide sequence