Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS06975

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS06970 and UW163_RS06975 are separated by 3 nucleotidesUW163_RS06975 and UW163_RS06980 are separated by 0 nucleotidesUW163_RS06980 and UW163_RS06985 are separated by 136 nucleotides UW163_RS06970: UW163_RS06970 - cytochrome o ubiquinol oxidase subunit I, at 1,492,848 to 1,494,827 _RS06970 UW163_RS06975: UW163_RS06975 - cytochrome o ubiquinol oxidase subunit III, at 1,494,831 to 1,495,466 _RS06975 UW163_RS06980: UW163_RS06980 - cytochrome o ubiquinol oxidase subunit IV, at 1,495,467 to 1,495,835 _RS06980 UW163_RS06985: UW163_RS06985 - energy-dependent translational throttle protein EttA, at 1,495,972 to 1,497,639 _RS06985 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -1 0 1at 1493.959 kb on - strand, within UW163_RS06970at 1494.261 kb on + strand, within UW163_RS06970at 1494.304 kb on - strand, within UW163_RS06970at 1494.496 kb on - strand, within UW163_RS06970at 1494.799 kb on - strandat 1494.825 kb on + strandat 1495.054 kb on - strand, within UW163_RS06975at 1495.098 kb on + strand, within UW163_RS06975at 1495.464 kb on + strandat 1495.695 kb on + strand, within UW163_RS06980at 1495.695 kb on + strand, within UW163_RS06980at 1495.696 kb on - strand, within UW163_RS06980at 1495.696 kb on - strand, within UW163_RS06980at 1495.934 kb on - strandat 1495.934 kb on - strandat 1495.982 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,493,959 - UW163_RS06970 0.56 +0.3
1,494,261 + UW163_RS06970 0.71 +0.7
1,494,304 - UW163_RS06970 0.74 -1.0
1,494,496 - UW163_RS06970 0.83 +1.4
1,494,799 - -1.0
1,494,825 + -0.7
1,495,054 - UW163_RS06975 0.35 -0.6
1,495,098 + UW163_RS06975 0.42 +0.3
1,495,464 + +0.2
1,495,695 + UW163_RS06980 0.62 +0.9
1,495,695 + UW163_RS06980 0.62 -0.1
1,495,696 - UW163_RS06980 0.62 -0.3
1,495,696 - UW163_RS06980 0.62 +0.4
1,495,934 - +1.1
1,495,934 - +1.1
1,495,982 - -0.2

Or see this region's nucleotide sequence