Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS05585

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS05575 and UW163_RS05580 overlap by 4 nucleotidesUW163_RS05580 and UW163_RS05585 are separated by 12 nucleotidesUW163_RS05585 and UW163_RS05590 overlap by 4 nucleotides UW163_RS05575: UW163_RS05575 - adenylyl-sulfate kinase, at 1,191,122 to 1,191,676 _RS05575 UW163_RS05580: UW163_RS05580 - alpha/beta hydrolase, at 1,191,673 to 1,192,575 _RS05580 UW163_RS05585: UW163_RS05585 - glycosyl transferase family 8, at 1,192,588 to 1,193,751 _RS05585 UW163_RS05590: UW163_RS05590 - hypothetical protein, at 1,193,748 to 1,195,850 _RS05590 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -2 -1 0 1at 1191.862 kb on - strand, within UW163_RS05580at 1192.039 kb on + strand, within UW163_RS05580at 1192.039 kb on + strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.046 kb on - strand, within UW163_RS05580at 1192.080 kb on + strand, within UW163_RS05580at 1192.081 kb on - strand, within UW163_RS05580at 1192.081 kb on - strand, within UW163_RS05580at 1192.169 kb on + strand, within UW163_RS05580at 1192.229 kb on + strandat 1192.229 kb on + strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strandat 1192.347 kb on - strand, within UW163_RS05580at 1192.385 kb on + strand, within UW163_RS05580at 1193.102 kb on + strand, within UW163_RS05585at 1193.102 kb on + strand, within UW163_RS05585at 1193.102 kb on + strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.226 kb on + strand, within UW163_RS05585at 1193.441 kb on + strand, within UW163_RS05585at 1193.447 kb on + strand, within UW163_RS05585at 1193.448 kb on - strand, within UW163_RS05585at 1193.453 kb on + strand, within UW163_RS05585at 1193.453 kb on + strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.791 kb on + strandat 1193.791 kb on + strandat 1193.792 kb on - strandat 1193.800 kb on + strandat 1193.800 kb on + strandat 1193.830 kb on + strandat 1193.830 kb on + strandat 1193.831 kb on - strandat 1193.831 kb on - strandat 1193.831 kb on - strandat 1193.865 kb on - strandat 1193.977 kb on + strand, within UW163_RS05590at 1193.977 kb on + strand, within UW163_RS05590at 1193.978 kb on - strand, within UW163_RS05590at 1193.978 kb on - strand, within UW163_RS05590at 1193.978 kb on - strand, within UW163_RS05590at 1194.040 kb on + strand, within UW163_RS05590at 1194.040 kb on + strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.049 kb on + strand, within UW163_RS05590at 1194.050 kb on - strand, within UW163_RS05590at 1194.076 kb on + strand, within UW163_RS05590at 1194.076 kb on - strand, within UW163_RS05590at 1194.110 kb on + strand, within UW163_RS05590at 1194.111 kb on - strand, within UW163_RS05590at 1194.111 kb on - strand, within UW163_RS05590at 1194.111 kb on - strand, within UW163_RS05590at 1194.113 kb on - strand, within UW163_RS05590at 1194.128 kb on + strand, within UW163_RS05590at 1194.129 kb on - strand, within UW163_RS05590at 1194.196 kb on + strand, within UW163_RS05590at 1194.197 kb on - strand, within UW163_RS05590at 1194.268 kb on + strand, within UW163_RS05590at 1194.268 kb on + strand, within UW163_RS05590at 1194.268 kb on + strand, within UW163_RS05590at 1194.269 kb on - strand, within UW163_RS05590at 1194.269 kb on - strand, within UW163_RS05590at 1194.269 kb on - strand, within UW163_RS05590at 1194.411 kb on + strand, within UW163_RS05590at 1194.411 kb on + strand, within UW163_RS05590at 1194.412 kb on - strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.572 kb on + strand, within UW163_RS05590at 1194.572 kb on + strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.647 kb on - strand, within UW163_RS05590

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,191,862 - UW163_RS05580 0.21 -0.3
1,192,039 + UW163_RS05580 0.41 +0.1
1,192,039 + UW163_RS05580 0.41 +0.4
1,192,040 - UW163_RS05580 0.41 -0.4
1,192,040 - UW163_RS05580 0.41 +0.7
1,192,040 - UW163_RS05580 0.41 -0.4
1,192,040 - UW163_RS05580 0.41 -0.9
1,192,040 - UW163_RS05580 0.41 -1.6
1,192,046 - UW163_RS05580 0.41 +1.7
1,192,080 + UW163_RS05580 0.45 +0.1
1,192,081 - UW163_RS05580 0.45 +0.4
1,192,081 - UW163_RS05580 0.45 -0.2
1,192,169 + UW163_RS05580 0.55 +0.3
1,192,229 + +1.2
1,192,229 + UW163_RS05580 0.62 +0.7
1,192,230 - UW163_RS05580 0.62 -0.5
1,192,230 - UW163_RS05580 0.62 -0.1
1,192,230 - UW163_RS05580 0.62 +0.6
1,192,230 - UW163_RS05580 0.62 +0.7
1,192,230 - UW163_RS05580 0.62 -0.6
1,192,346 + UW163_RS05580 0.75 -0.4
1,192,346 + UW163_RS05580 0.75 +0.3
1,192,346 + UW163_RS05580 0.75 -2.0
1,192,346 + UW163_RS05580 0.75 +0.3
1,192,346 + UW163_RS05580 0.75 -0.6
1,192,347 - UW163_RS05580 0.75 +0.0
1,192,347 - UW163_RS05580 0.75 -0.3
1,192,347 - UW163_RS05580 0.75 -0.1
1,192,347 - UW163_RS05580 0.75 -0.0
1,192,347 - UW163_RS05580 0.75 +0.8
1,192,347 - UW163_RS05580 0.75 +0.1
1,192,347 - +0.6
1,192,347 - UW163_RS05580 0.75 -0.7
1,192,385 + UW163_RS05580 0.79 -0.0
1,193,102 + UW163_RS05585 0.44 -1.2
1,193,102 + UW163_RS05585 0.44 -0.3
1,193,102 + UW163_RS05585 0.44 +0.0
1,193,103 - UW163_RS05585 0.44 +0.2
1,193,103 - UW163_RS05585 0.44 -1.2
1,193,103 - UW163_RS05585 0.44 +0.6
1,193,226 + UW163_RS05585 0.55 -0.3
1,193,441 + UW163_RS05585 0.73 +0.6
1,193,447 + UW163_RS05585 0.74 -0.2
1,193,448 - UW163_RS05585 0.74 +0.4
1,193,453 + UW163_RS05585 0.74 +0.7
1,193,453 + UW163_RS05585 0.74 +0.4
1,193,454 - UW163_RS05585 0.74 -0.2
1,193,454 - UW163_RS05585 0.74 +0.0
1,193,454 - UW163_RS05585 0.74 -0.8
1,193,791 + -0.2
1,193,791 + -0.1
1,193,792 - -0.5
1,193,800 + +0.1
1,193,800 + -0.9
1,193,830 + -1.2
1,193,830 + +0.2
1,193,831 - -0.1
1,193,831 - +0.5
1,193,831 - -1.5
1,193,865 - -0.3
1,193,977 + UW163_RS05590 0.11 -0.3
1,193,977 + UW163_RS05590 0.11 -0.8
1,193,978 - UW163_RS05590 0.11 -1.0
1,193,978 - UW163_RS05590 0.11 -0.0
1,193,978 - UW163_RS05590 0.11 -0.3
1,194,040 + UW163_RS05590 0.14 +0.1
1,194,040 + UW163_RS05590 0.14 +0.1
1,194,041 - UW163_RS05590 0.14 -1.3
1,194,041 - UW163_RS05590 0.14 +1.5
1,194,041 - UW163_RS05590 0.14 +0.0
1,194,041 - UW163_RS05590 0.14 +0.5
1,194,041 - UW163_RS05590 0.14 -0.2
1,194,041 - UW163_RS05590 0.14 -0.1
1,194,049 + UW163_RS05590 0.14 -0.0
1,194,050 - UW163_RS05590 0.14 +1.5
1,194,076 + UW163_RS05590 0.16 -0.1
1,194,076 - UW163_RS05590 0.16 +0.3
1,194,110 + UW163_RS05590 0.17 -0.6
1,194,111 - UW163_RS05590 0.17 +0.2
1,194,111 - UW163_RS05590 0.17 +0.1
1,194,111 - UW163_RS05590 0.17 -0.2
1,194,113 - UW163_RS05590 0.17 -0.0
1,194,128 + UW163_RS05590 0.18 -0.1
1,194,129 - UW163_RS05590 0.18 +0.6
1,194,196 + UW163_RS05590 0.21 -0.2
1,194,197 - UW163_RS05590 0.21 -1.1
1,194,268 + UW163_RS05590 0.25 +0.3
1,194,268 + UW163_RS05590 0.25 +0.7
1,194,268 + UW163_RS05590 0.25 +0.6
1,194,269 - UW163_RS05590 0.25 -0.6
1,194,269 - UW163_RS05590 0.25 +0.6
1,194,269 - UW163_RS05590 0.25 +0.1
1,194,411 + UW163_RS05590 0.32 -0.1
1,194,411 + UW163_RS05590 0.32 -0.4
1,194,412 - UW163_RS05590 0.32 -0.8
1,194,568 + UW163_RS05590 0.39 -0.2
1,194,568 + UW163_RS05590 0.39 -0.2
1,194,568 + UW163_RS05590 0.39 -0.2
1,194,568 + UW163_RS05590 0.39 -0.2
1,194,568 + UW163_RS05590 0.39 +0.4
1,194,569 - UW163_RS05590 0.39 -0.4
1,194,569 - UW163_RS05590 0.39 -0.1
1,194,569 - UW163_RS05590 0.39 -0.2
1,194,569 - UW163_RS05590 0.39 -0.5
1,194,569 - UW163_RS05590 0.39 +0.2
1,194,569 - UW163_RS05590 0.39 -1.9
1,194,572 + UW163_RS05590 0.39 -0.1
1,194,572 + UW163_RS05590 0.39 -0.3
1,194,573 - UW163_RS05590 0.39 +0.2
1,194,573 - UW163_RS05590 0.39 -0.8
1,194,573 - UW163_RS05590 0.39 -0.7
1,194,573 - UW163_RS05590 0.39 -0.7
1,194,573 - UW163_RS05590 0.39 -0.6
1,194,573 - UW163_RS05590 0.39 +0.5
1,194,573 - UW163_RS05590 0.39 -0.7
1,194,647 - UW163_RS05590 0.43 -0.1

Or see this region's nucleotide sequence