Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_25255 and IAI46_25260 are separated by 2 nucleotides IAI46_25260 and IAI46_25265 overlap by 37 nucleotides IAI46_25265 and IAI46_25270 are separated by 18 nucleotides
IAI46_25255: IAI46_25255 - membrane protein insertase YidC, at 5,392,484 to 5,394,121
_25255
IAI46_25260: IAI46_25260 - membrane protein insertion efficiency factor YidD, at 5,394,124 to 5,394,381
_25260
IAI46_25265: IAI46_25265 - ribonuclease P protein component, at 5,394,345 to 5,394,704
_25265
IAI46_25270: IAI46_25270 - 50S ribosomal protein L34, at 5,394,723 to 5,394,863
_25270
Position (kb)
5394
5395 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5394.229 kb on + strand, within IAI46_25260 at 5394.230 kb on - strand, within IAI46_25260 at 5394.230 kb on - strand, within IAI46_25260 at 5394.230 kb on - strand, within IAI46_25260 at 5394.248 kb on - strand, within IAI46_25260 at 5394.248 kb on - strand, within IAI46_25260 at 5395.097 kb on + strand at 5395.109 kb on + strand at 5395.110 kb on - strand at 5395.117 kb on + strand at 5395.131 kb on + strand at 5395.132 kb on - strand at 5395.210 kb on + strand at 5395.210 kb on + strand at 5395.210 kb on + strand at 5395.211 kb on - strand at 5395.211 kb on - strand at 5395.211 kb on - strand at 5395.211 kb on - strand at 5395.213 kb on - strand at 5395.323 kb on + strand at 5395.323 kb on + strand at 5395.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 5,394,229 + IAI46_25260 0.41 -0.6 5,394,230 - IAI46_25260 0.41 -0.9 5,394,230 - IAI46_25260 0.41 -3.2 5,394,230 - IAI46_25260 0.41 -0.1 5,394,248 - IAI46_25260 0.48 -0.0 5,394,248 - IAI46_25260 0.48 -0.7 5,395,097 + -1.6 5,395,109 + -1.4 5,395,110 - +0.2 5,395,117 + +0.2 5,395,131 + +1.0 5,395,132 - -0.8 5,395,210 + -0.3 5,395,210 + -0.8 5,395,210 + +1.0 5,395,211 - -0.3 5,395,211 - -1.1 5,395,211 - -0.5 5,395,211 - -0.8 5,395,213 - -0.1 5,395,323 + +0.3 5,395,323 + +0.6 5,395,324 - +0.9
Or see this region's nucleotide sequence