Strain Fitness in Serratia liquefaciens MT49 around IAI46_24710

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24700 and IAI46_24705 are separated by 28 nucleotidesIAI46_24705 and IAI46_24710 are separated by 298 nucleotidesIAI46_24710 and IAI46_24715 are separated by 9 nucleotides IAI46_24700: IAI46_24700 - glutaredoxin 3, at 5,272,307 to 5,272,555 _24700 IAI46_24705: IAI46_24705 - rhodanese-like domain-containing protein, at 5,272,584 to 5,273,018 _24705 IAI46_24710: IAI46_24710 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 5,273,317 to 5,274,861 _24710 IAI46_24715: IAI46_24715 - murein hydrolase activator EnvC, at 5,274,871 to 5,276,205 _24715 Position (kb) 5273 5274 5275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5272.348 kb on - strand, within IAI46_24700at 5272.349 kb on + strand, within IAI46_24700at 5272.369 kb on + strand, within IAI46_24700at 5272.536 kb on + strandat 5272.536 kb on + strandat 5272.536 kb on + strandat 5272.536 kb on + strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.540 kb on + strandat 5272.540 kb on + strandat 5272.540 kb on + strandat 5272.549 kb on + strandat 5272.549 kb on + strandat 5272.560 kb on + strandat 5272.561 kb on - strandat 5272.561 kb on - strandat 5272.561 kb on - strandat 5272.572 kb on + strandat 5272.572 kb on + strandat 5272.573 kb on - strandat 5272.578 kb on - strandat 5272.585 kb on + strandat 5272.585 kb on + strandat 5272.585 kb on + strandat 5272.586 kb on - strandat 5272.586 kb on - strandat 5272.646 kb on + strand, within IAI46_24705at 5272.646 kb on + strand, within IAI46_24705at 5272.646 kb on + strand, within IAI46_24705at 5272.646 kb on + strand, within IAI46_24705at 5272.869 kb on - strand, within IAI46_24705at 5272.977 kb on + strandat 5272.978 kb on - strandat 5272.978 kb on - strandat 5272.992 kb on - strandat 5273.025 kb on + strandat 5273.025 kb on + strandat 5273.025 kb on + strandat 5273.025 kb on + strandat 5273.026 kb on - strandat 5273.026 kb on - strandat 5273.072 kb on + strandat 5273.073 kb on - strandat 5273.073 kb on - strandat 5273.073 kb on - strandat 5273.074 kb on + strandat 5273.074 kb on + strandat 5273.075 kb on - strandat 5273.075 kb on - strandat 5273.075 kb on - strandat 5273.075 kb on - strandat 5273.094 kb on + strandat 5273.095 kb on - strandat 5273.095 kb on - strandat 5273.103 kb on + strandat 5273.103 kb on + strandat 5273.104 kb on - strandat 5273.114 kb on + strandat 5273.115 kb on - strandat 5273.134 kb on - strandat 5273.162 kb on + strandat 5273.163 kb on - strandat 5273.251 kb on + strandat 5273.281 kb on + strandat 5273.282 kb on - strandat 5273.293 kb on - strandat 5273.310 kb on + strandat 5273.311 kb on - strandat 5273.343 kb on - strandat 5273.343 kb on - strandat 5273.448 kb on + strandat 5273.448 kb on + strandat 5273.449 kb on - strandat 5273.454 kb on + strandat 5273.658 kb on + strand, within IAI46_24710at 5273.658 kb on + strand, within IAI46_24710at 5273.658 kb on + strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.659 kb on - strand, within IAI46_24710at 5273.706 kb on + strand, within IAI46_24710at 5273.706 kb on + strand, within IAI46_24710at 5273.756 kb on - strand, within IAI46_24710at 5273.824 kb on - strand, within IAI46_24710at 5273.878 kb on + strand, within IAI46_24710at 5273.878 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.882 kb on - strand, within IAI46_24710at 5273.882 kb on - strand, within IAI46_24710at 5273.882 kb on - strand, within IAI46_24710at 5273.887 kb on - strand, within IAI46_24710at 5273.927 kb on - strand, within IAI46_24710at 5273.933 kb on + strand, within IAI46_24710at 5273.933 kb on + strand, within IAI46_24710at 5274.141 kb on - strand, within IAI46_24710at 5274.211 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.421 kb on + strand, within IAI46_24710at 5274.480 kb on + strand, within IAI46_24710at 5274.493 kb on + strand, within IAI46_24710at 5274.494 kb on - strand, within IAI46_24710at 5274.515 kb on - strand, within IAI46_24710at 5274.528 kb on + strand, within IAI46_24710at 5274.529 kb on - strand, within IAI46_24710at 5274.733 kb on + strandat 5274.734 kb on - strandat 5274.837 kb on + strandat 5274.837 kb on + strandat 5274.870 kb on + strandat 5274.871 kb on - strandat 5274.897 kb on - strandat 5274.897 kb on - strandat 5274.965 kb on + strandat 5274.966 kb on - strandat 5274.987 kb on - strandat 5275.042 kb on - strand, within IAI46_24715at 5275.042 kb on - strand, within IAI46_24715at 5275.138 kb on - strand, within IAI46_24715at 5275.218 kb on + strand, within IAI46_24715at 5275.218 kb on + strand, within IAI46_24715at 5275.219 kb on + strand, within IAI46_24715at 5275.219 kb on - strand, within IAI46_24715at 5275.219 kb on - strand, within IAI46_24715at 5275.366 kb on - strand, within IAI46_24715at 5275.374 kb on + strand, within IAI46_24715at 5275.375 kb on - strand, within IAI46_24715at 5275.384 kb on + strand, within IAI46_24715at 5275.506 kb on - strand, within IAI46_24715at 5275.506 kb on - strand, within IAI46_24715at 5275.557 kb on + strand, within IAI46_24715at 5275.764 kb on + strand, within IAI46_24715at 5275.765 kb on - strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.771 kb on - strand, within IAI46_24715at 5275.771 kb on - strand, within IAI46_24715at 5275.841 kb on + strand, within IAI46_24715at 5275.841 kb on + strand, within IAI46_24715

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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5,272,348 - IAI46_24700 0.16 -0.5
5,272,349 + IAI46_24700 0.17 +0.5
5,272,369 + IAI46_24700 0.25 -0.5
5,272,536 + +0.2
5,272,536 + -1.0
5,272,536 + -2.5
5,272,536 + +0.6
5,272,537 - +0.2
5,272,537 - -0.0
5,272,537 - +0.1
5,272,537 - -0.5
5,272,537 - +0.4
5,272,537 - -0.4
5,272,540 + -2.9
5,272,540 + +0.6
5,272,540 + -1.3
5,272,549 + -0.6
5,272,549 + -0.8
5,272,560 + -0.1
5,272,561 - +1.2
5,272,561 - +0.6
5,272,561 - -0.2
5,272,572 + +1.0
5,272,572 + +0.1
5,272,573 - +0.0
5,272,578 - -0.4
5,272,585 + -0.1
5,272,585 + -0.9
5,272,585 + +2.0
5,272,586 - -0.1
5,272,586 - -1.1
5,272,646 + IAI46_24705 0.14 -1.6
5,272,646 + IAI46_24705 0.14 -0.5
5,272,646 + IAI46_24705 0.14 -0.7
5,272,646 + IAI46_24705 0.14 -1.0
5,272,869 - IAI46_24705 0.66 +0.8
5,272,977 + -1.4
5,272,978 - +0.0
5,272,978 - +0.5
5,272,992 - +0.1
5,273,025 + +0.5
5,273,025 + -0.7
5,273,025 + -0.4
5,273,025 + -0.0
5,273,026 - +0.3
5,273,026 - +0.3
5,273,072 + -1.9
5,273,073 - +0.8
5,273,073 - +1.4
5,273,073 - +0.6
5,273,074 + -1.1
5,273,074 + -1.0
5,273,075 - -0.4
5,273,075 - -0.0
5,273,075 - -0.1
5,273,075 - +0.7
5,273,094 + +0.2
5,273,095 - +0.1
5,273,095 - +1.4
5,273,103 + +0.4
5,273,103 + -1.0
5,273,104 - -0.0
5,273,114 + +0.6
5,273,115 - -0.1
5,273,134 - +0.4
5,273,162 + -0.8
5,273,163 - -0.2
5,273,251 + +0.3
5,273,281 + +0.2
5,273,282 - +1.0
5,273,293 - -0.1
5,273,310 + +0.3
5,273,311 - +0.6
5,273,343 - +0.7
5,273,343 - +0.2
5,273,448 + +0.1
5,273,448 + +0.4
5,273,449 - +0.1
5,273,454 + +0.9
5,273,658 + IAI46_24710 0.22 +0.4
5,273,658 + IAI46_24710 0.22 +0.3
5,273,658 + IAI46_24710 0.22 -0.4
5,273,659 - IAI46_24710 0.22 -0.5
5,273,659 - IAI46_24710 0.22 +0.2
5,273,659 - IAI46_24710 0.22 +0.6
5,273,659 - IAI46_24710 0.22 +1.0
5,273,659 - IAI46_24710 0.22 +0.6
5,273,659 - IAI46_24710 0.22 +0.3
5,273,659 - IAI46_24710 0.22 +0.1
5,273,659 - IAI46_24710 0.22 -0.2
5,273,706 + IAI46_24710 0.25 +0.0
5,273,706 + IAI46_24710 0.25 -0.1
5,273,756 - IAI46_24710 0.28 +0.0
5,273,824 - IAI46_24710 0.33 +0.0
5,273,878 + IAI46_24710 0.36 -1.2
5,273,878 + IAI46_24710 0.36 +0.4
5,273,881 + IAI46_24710 0.37 +0.1
5,273,881 + IAI46_24710 0.37 -0.3
5,273,881 + IAI46_24710 0.37 -0.3
5,273,881 + IAI46_24710 0.37 -2.3
5,273,882 - IAI46_24710 0.37 -1.1
5,273,882 - IAI46_24710 0.37 -0.2
5,273,882 - IAI46_24710 0.37 -0.0
5,273,887 - IAI46_24710 0.37 +0.4
5,273,927 - IAI46_24710 0.39 +0.2
5,273,933 + IAI46_24710 0.40 +0.2
5,273,933 + IAI46_24710 0.40 -0.3
5,274,141 - IAI46_24710 0.53 -0.3
5,274,211 + IAI46_24710 0.58 -0.7
5,274,349 + IAI46_24710 0.67 +0.7
5,274,349 + IAI46_24710 0.67 +0.7
5,274,349 + IAI46_24710 0.67 -1.0
5,274,349 + IAI46_24710 0.67 +0.1
5,274,350 - IAI46_24710 0.67 +0.5
5,274,350 - IAI46_24710 0.67 +0.5
5,274,350 - IAI46_24710 0.67 -0.1
5,274,350 - IAI46_24710 0.67 -0.2
5,274,421 + IAI46_24710 0.71 +0.9
5,274,480 + IAI46_24710 0.75 +0.2
5,274,493 + IAI46_24710 0.76 -0.0
5,274,494 - IAI46_24710 0.76 -0.2
5,274,515 - IAI46_24710 0.78 -0.8
5,274,528 + IAI46_24710 0.78 -0.6
5,274,529 - IAI46_24710 0.78 -0.7
5,274,733 + -0.3
5,274,734 - +0.4
5,274,837 + +0.8
5,274,837 + -1.5
5,274,870 + +0.3
5,274,871 - -0.1
5,274,897 - +0.1
5,274,897 - -1.2
5,274,965 + +0.4
5,274,966 - -0.4
5,274,987 - +0.1
5,275,042 - IAI46_24715 0.13 -0.1
5,275,042 - IAI46_24715 0.13 +0.3
5,275,138 - IAI46_24715 0.20 +0.5
5,275,218 + IAI46_24715 0.26 +0.5
5,275,218 + IAI46_24715 0.26 -0.1
5,275,219 + IAI46_24715 0.26 +1.1
5,275,219 - IAI46_24715 0.26 -0.5
5,275,219 - IAI46_24715 0.26 +0.8
5,275,366 - IAI46_24715 0.37 -0.6
5,275,374 + IAI46_24715 0.38 +1.2
5,275,375 - IAI46_24715 0.38 -0.5
5,275,384 + IAI46_24715 0.38 -1.1
5,275,506 - IAI46_24715 0.48 -0.4
5,275,506 - IAI46_24715 0.48 -1.1
5,275,557 + IAI46_24715 0.51 -0.2
5,275,764 + IAI46_24715 0.67 -0.4
5,275,765 - IAI46_24715 0.67 -1.0
5,275,768 + IAI46_24715 0.67 +0.1
5,275,768 + IAI46_24715 0.67 -0.9
5,275,768 + IAI46_24715 0.67 +0.7
5,275,768 + IAI46_24715 0.67 -0.1
5,275,768 + IAI46_24715 0.67 -0.4
5,275,769 - IAI46_24715 0.67 +0.5
5,275,769 - IAI46_24715 0.67 -1.3
5,275,769 - IAI46_24715 0.67 -0.4
5,275,769 - IAI46_24715 0.67 -1.1
5,275,771 - IAI46_24715 0.67 -1.4
5,275,771 - IAI46_24715 0.67 +0.3
5,275,841 + IAI46_24715 0.73 -0.3
5,275,841 + IAI46_24715 0.73 -0.1

Or see this region's nucleotide sequence