Strain Fitness in Serratia liquefaciens MT49 around IAI46_24295

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24290 and IAI46_24295 are separated by 328 nucleotidesIAI46_24295 and IAI46_24300 are separated by 108 nucleotidesIAI46_24300 and IAI46_24305 are separated by 29 nucleotides IAI46_24290: IAI46_24290 - inner membrane protein YhjD, at 5,184,260 to 5,185,279 _24290 IAI46_24295: IAI46_24295 - MHS family MFS transporter, at 5,185,608 to 5,186,930 _24295 IAI46_24300: IAI46_24300 - CDP-diacylglycerol diphosphatase, at 5,187,039 to 5,187,797 _24300 IAI46_24305: IAI46_24305 - AsmA family protein, at 5,187,827 to 5,189,860 _24305 Position (kb) 5185 5186 5187Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5184.661 kb on + strand, within IAI46_24290at 5184.661 kb on + strand, within IAI46_24290at 5184.661 kb on + strand, within IAI46_24290at 5184.698 kb on + strand, within IAI46_24290at 5184.803 kb on + strand, within IAI46_24290at 5184.804 kb on - strand, within IAI46_24290at 5184.804 kb on - strand, within IAI46_24290at 5184.850 kb on + strand, within IAI46_24290at 5184.924 kb on + strand, within IAI46_24290at 5184.924 kb on + strand, within IAI46_24290at 5184.924 kb on + strand, within IAI46_24290at 5184.924 kb on + strand, within IAI46_24290at 5184.925 kb on - strand, within IAI46_24290at 5184.925 kb on - strand, within IAI46_24290at 5184.925 kb on - strand, within IAI46_24290at 5184.925 kb on - strand, within IAI46_24290at 5184.925 kb on - strand, within IAI46_24290at 5184.983 kb on + strand, within IAI46_24290at 5184.983 kb on + strand, within IAI46_24290at 5184.983 kb on + strand, within IAI46_24290at 5184.983 kb on + strand, within IAI46_24290at 5184.983 kb on + strand, within IAI46_24290at 5184.983 kb on + strand, within IAI46_24290at 5184.984 kb on - strand, within IAI46_24290at 5184.984 kb on - strand, within IAI46_24290at 5185.025 kb on - strand, within IAI46_24290at 5185.087 kb on + strand, within IAI46_24290at 5185.087 kb on + strand, within IAI46_24290at 5185.088 kb on - strand, within IAI46_24290at 5185.123 kb on + strand, within IAI46_24290at 5185.123 kb on + strand, within IAI46_24290at 5185.124 kb on - strand, within IAI46_24290at 5185.178 kb on + strandat 5185.232 kb on + strandat 5185.234 kb on + strandat 5185.234 kb on + strandat 5185.234 kb on + strandat 5185.235 kb on - strandat 5185.235 kb on - strandat 5185.235 kb on - strandat 5185.235 kb on - strandat 5185.235 kb on - strandat 5185.243 kb on + strandat 5185.342 kb on - strandat 5185.394 kb on - strandat 5185.468 kb on - strandat 5185.474 kb on + strandat 5185.475 kb on - strandat 5185.475 kb on - strandat 5185.569 kb on + strandat 5185.569 kb on + strandat 5185.569 kb on + strandat 5185.569 kb on + strandat 5185.569 kb on + strandat 5185.570 kb on - strandat 5185.570 kb on - strandat 5185.570 kb on - strandat 5185.570 kb on - strandat 5185.596 kb on - strandat 5185.604 kb on + strandat 5185.604 kb on + strandat 5185.605 kb on - strandat 5185.607 kb on + strandat 5185.607 kb on + strandat 5185.608 kb on - strandat 5185.608 kb on - strandat 5185.608 kb on - strandat 5185.661 kb on + strandat 5185.731 kb on + strandat 5185.732 kb on - strandat 5185.763 kb on + strand, within IAI46_24295at 5185.764 kb on - strand, within IAI46_24295at 5185.889 kb on + strand, within IAI46_24295at 5185.890 kb on - strand, within IAI46_24295at 5185.890 kb on - strand, within IAI46_24295at 5185.959 kb on + strand, within IAI46_24295at 5185.959 kb on + strand, within IAI46_24295at 5185.974 kb on - strand, within IAI46_24295at 5186.095 kb on - strand, within IAI46_24295at 5186.216 kb on + strand, within IAI46_24295at 5186.250 kb on + strand, within IAI46_24295at 5186.251 kb on - strand, within IAI46_24295at 5186.251 kb on - strand, within IAI46_24295at 5186.251 kb on - strand, within IAI46_24295at 5186.254 kb on + strand, within IAI46_24295at 5186.254 kb on + strand, within IAI46_24295at 5186.254 kb on + strand, within IAI46_24295at 5186.254 kb on + strand, within IAI46_24295at 5186.255 kb on - strand, within IAI46_24295at 5186.255 kb on - strand, within IAI46_24295at 5186.255 kb on - strand, within IAI46_24295at 5186.374 kb on - strand, within IAI46_24295at 5186.391 kb on + strand, within IAI46_24295at 5186.391 kb on + strand, within IAI46_24295at 5186.391 kb on + strand, within IAI46_24295at 5186.391 kb on + strand, within IAI46_24295at 5186.391 kb on + strand, within IAI46_24295at 5186.392 kb on - strand, within IAI46_24295at 5186.392 kb on - strand, within IAI46_24295at 5186.393 kb on + strand, within IAI46_24295at 5186.393 kb on + strand, within IAI46_24295at 5186.393 kb on + strand, within IAI46_24295at 5186.393 kb on + strand, within IAI46_24295at 5186.418 kb on + strand, within IAI46_24295at 5186.430 kb on + strand, within IAI46_24295at 5186.431 kb on - strand, within IAI46_24295at 5186.432 kb on - strand, within IAI46_24295at 5186.463 kb on + strand, within IAI46_24295at 5186.525 kb on - strand, within IAI46_24295at 5186.525 kb on - strand, within IAI46_24295at 5186.583 kb on - strand, within IAI46_24295at 5186.583 kb on - strand, within IAI46_24295at 5186.745 kb on + strand, within IAI46_24295at 5186.745 kb on + strand, within IAI46_24295at 5186.746 kb on - strand, within IAI46_24295at 5186.748 kb on - strand, within IAI46_24295at 5186.766 kb on + strand, within IAI46_24295at 5186.767 kb on - strand, within IAI46_24295at 5186.767 kb on - strand, within IAI46_24295at 5186.767 kb on - strand, within IAI46_24295at 5186.767 kb on - strand, within IAI46_24295at 5186.805 kb on + strandat 5186.805 kb on + strandat 5186.806 kb on - strandat 5186.806 kb on - strandat 5186.806 kb on - strandat 5186.807 kb on + strandat 5186.808 kb on - strandat 5186.844 kb on + strandat 5186.844 kb on + strandat 5186.844 kb on + strandat 5186.844 kb on + strandat 5186.845 kb on - strandat 5186.845 kb on - strandat 5186.845 kb on - strandat 5186.845 kb on - strandat 5186.845 kb on - strandat 5186.845 kb on - strandat 5186.998 kb on + strandat 5186.998 kb on + strandat 5186.999 kb on - strandat 5187.038 kb on - strandat 5187.066 kb on + strandat 5187.122 kb on - strand, within IAI46_24300at 5187.142 kb on + strand, within IAI46_24300at 5187.149 kb on + strand, within IAI46_24300at 5187.149 kb on + strand, within IAI46_24300at 5187.150 kb on - strand, within IAI46_24300at 5187.188 kb on + strand, within IAI46_24300at 5187.189 kb on - strand, within IAI46_24300at 5187.189 kb on - strand, within IAI46_24300at 5187.189 kb on - strand, within IAI46_24300at 5187.215 kb on - strand, within IAI46_24300at 5187.267 kb on + strand, within IAI46_24300at 5187.267 kb on + strand, within IAI46_24300at 5187.268 kb on - strand, within IAI46_24300at 5187.271 kb on + strand, within IAI46_24300at 5187.271 kb on + strand, within IAI46_24300at 5187.272 kb on - strand, within IAI46_24300at 5187.272 kb on - strand, within IAI46_24300at 5187.272 kb on - strand, within IAI46_24300at 5187.272 kb on - strand, within IAI46_24300at 5187.372 kb on - strand, within IAI46_24300at 5187.380 kb on + strand, within IAI46_24300at 5187.381 kb on - strand, within IAI46_24300at 5187.385 kb on - strand, within IAI46_24300at 5187.426 kb on - strand, within IAI46_24300at 5187.426 kb on - strand, within IAI46_24300at 5187.435 kb on + strand, within IAI46_24300at 5187.461 kb on + strand, within IAI46_24300at 5187.461 kb on + strand, within IAI46_24300at 5187.461 kb on + strand, within IAI46_24300at 5187.461 kb on + strand, within IAI46_24300at 5187.461 kb on + strand, within IAI46_24300at 5187.462 kb on - strand, within IAI46_24300at 5187.462 kb on - strand, within IAI46_24300at 5187.462 kb on - strand, within IAI46_24300at 5187.462 kb on - strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.467 kb on + strand, within IAI46_24300at 5187.468 kb on - strand, within IAI46_24300at 5187.468 kb on - strand, within IAI46_24300at 5187.481 kb on + strand, within IAI46_24300at 5187.523 kb on - strand, within IAI46_24300at 5187.523 kb on - strand, within IAI46_24300at 5187.523 kb on - strand, within IAI46_24300at 5187.523 kb on - strand, within IAI46_24300at 5187.523 kb on - strand, within IAI46_24300at 5187.571 kb on - strand, within IAI46_24300at 5187.571 kb on - strand, within IAI46_24300at 5187.577 kb on + strand, within IAI46_24300at 5187.577 kb on + strand, within IAI46_24300at 5187.578 kb on - strand, within IAI46_24300at 5187.578 kb on - strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.581 kb on + strand, within IAI46_24300at 5187.582 kb on - strand, within IAI46_24300at 5187.582 kb on - strand, within IAI46_24300at 5187.582 kb on - strand, within IAI46_24300at 5187.582 kb on - strand, within IAI46_24300at 5187.594 kb on - strand, within IAI46_24300at 5187.641 kb on - strand, within IAI46_24300at 5187.743 kb on + strandat 5187.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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5,184,661 + IAI46_24290 0.39 +0.6
5,184,661 + IAI46_24290 0.39 -0.1
5,184,661 + IAI46_24290 0.39 +0.1
5,184,698 + IAI46_24290 0.43 +0.2
5,184,803 + IAI46_24290 0.53 +0.2
5,184,804 - IAI46_24290 0.53 -0.0
5,184,804 - IAI46_24290 0.53 -0.2
5,184,850 + IAI46_24290 0.58 +0.3
5,184,924 + IAI46_24290 0.65 +0.3
5,184,924 + IAI46_24290 0.65 +0.8
5,184,924 + IAI46_24290 0.65 -0.8
5,184,924 + IAI46_24290 0.65 +0.7
5,184,925 - IAI46_24290 0.65 +0.4
5,184,925 - IAI46_24290 0.65 -1.2
5,184,925 - IAI46_24290 0.65 +0.0
5,184,925 - IAI46_24290 0.65 +0.6
5,184,925 - IAI46_24290 0.65 +0.8
5,184,983 + IAI46_24290 0.71 +0.8
5,184,983 + IAI46_24290 0.71 +0.3
5,184,983 + IAI46_24290 0.71 +0.6
5,184,983 + IAI46_24290 0.71 -0.1
5,184,983 + IAI46_24290 0.71 -0.7
5,184,983 + IAI46_24290 0.71 +0.2
5,184,984 - IAI46_24290 0.71 +0.5
5,184,984 - IAI46_24290 0.71 +1.1
5,185,025 - IAI46_24290 0.75 +0.5
5,185,087 + IAI46_24290 0.81 -0.5
5,185,087 + IAI46_24290 0.81 -0.3
5,185,088 - IAI46_24290 0.81 -0.2
5,185,123 + IAI46_24290 0.85 +0.1
5,185,123 + IAI46_24290 0.85 -0.0
5,185,124 - IAI46_24290 0.85 -0.0
5,185,178 + -0.2
5,185,232 + +0.9
5,185,234 + -0.4
5,185,234 + +0.4
5,185,234 + +0.2
5,185,235 - +1.8
5,185,235 - +0.2
5,185,235 - -0.6
5,185,235 - -1.5
5,185,235 - +0.3
5,185,243 + -0.4
5,185,342 - +1.5
5,185,394 - -0.2
5,185,468 - -0.1
5,185,474 + +0.0
5,185,475 - +1.0
5,185,475 - +0.2
5,185,569 + -0.4
5,185,569 + -0.2
5,185,569 + +0.0
5,185,569 + +0.7
5,185,569 + +0.1
5,185,570 - +0.1
5,185,570 - -1.5
5,185,570 - +0.8
5,185,570 - -0.3
5,185,596 - +0.6
5,185,604 + +1.1
5,185,604 + +1.2
5,185,605 - -0.1
5,185,607 + +0.5
5,185,607 + +0.8
5,185,608 - -0.1
5,185,608 - +0.2
5,185,608 - +0.0
5,185,661 + -0.8
5,185,731 + -0.8
5,185,732 - -0.1
5,185,763 + IAI46_24295 0.12 -0.0
5,185,764 - IAI46_24295 0.12 +0.3
5,185,889 + IAI46_24295 0.21 +0.9
5,185,890 - IAI46_24295 0.21 +1.4
5,185,890 - IAI46_24295 0.21 -0.2
5,185,959 + IAI46_24295 0.27 -0.3
5,185,959 + IAI46_24295 0.27 +0.7
5,185,974 - IAI46_24295 0.28 +0.1
5,186,095 - IAI46_24295 0.37 +0.2
5,186,216 + IAI46_24295 0.46 -0.6
5,186,250 + IAI46_24295 0.49 +0.1
5,186,251 - IAI46_24295 0.49 +0.2
5,186,251 - IAI46_24295 0.49 +0.0
5,186,251 - IAI46_24295 0.49 +0.2
5,186,254 + IAI46_24295 0.49 +0.0
5,186,254 + IAI46_24295 0.49 +1.1
5,186,254 + IAI46_24295 0.49 +0.4
5,186,254 + IAI46_24295 0.49 +0.2
5,186,255 - IAI46_24295 0.49 -0.1
5,186,255 - IAI46_24295 0.49 +0.2
5,186,255 - IAI46_24295 0.49 +0.8
5,186,374 - IAI46_24295 0.58 +0.9
5,186,391 + IAI46_24295 0.59 -0.5
5,186,391 + IAI46_24295 0.59 +0.2
5,186,391 + IAI46_24295 0.59 +0.5
5,186,391 + IAI46_24295 0.59 -0.5
5,186,391 + IAI46_24295 0.59 -0.3
5,186,392 - IAI46_24295 0.59 +0.9
5,186,392 - IAI46_24295 0.59 +0.4
5,186,393 + IAI46_24295 0.59 -0.5
5,186,393 + IAI46_24295 0.59 +0.9
5,186,393 + IAI46_24295 0.59 +1.1
5,186,393 + IAI46_24295 0.59 -0.4
5,186,418 + IAI46_24295 0.61 +0.5
5,186,430 + IAI46_24295 0.62 +0.3
5,186,431 - IAI46_24295 0.62 +0.2
5,186,432 - IAI46_24295 0.62 -0.3
5,186,463 + IAI46_24295 0.65 -0.7
5,186,525 - IAI46_24295 0.69 -0.1
5,186,525 - IAI46_24295 0.69 -0.9
5,186,583 - IAI46_24295 0.74 -0.3
5,186,583 - IAI46_24295 0.74 -0.1
5,186,745 + IAI46_24295 0.86 -1.2
5,186,745 + IAI46_24295 0.86 +0.7
5,186,746 - IAI46_24295 0.86 -0.1
5,186,748 - IAI46_24295 0.86 -0.2
5,186,766 + IAI46_24295 0.88 +0.2
5,186,767 - IAI46_24295 0.88 +0.1
5,186,767 - IAI46_24295 0.88 -0.5
5,186,767 - IAI46_24295 0.88 -0.9
5,186,767 - IAI46_24295 0.88 +0.0
5,186,805 + +0.4
5,186,805 + +0.4
5,186,806 - -0.3
5,186,806 - -0.8
5,186,806 - +0.7
5,186,807 + +0.4
5,186,808 - +0.0
5,186,844 + +0.4
5,186,844 + +0.1
5,186,844 + +1.5
5,186,844 + +0.3
5,186,845 - -0.5
5,186,845 - +0.1
5,186,845 - +0.6
5,186,845 - -0.4
5,186,845 - +0.2
5,186,845 - +0.8
5,186,998 + -0.3
5,186,998 + -0.1
5,186,999 - +0.6
5,187,038 - -0.2
5,187,066 + +0.5
5,187,122 - IAI46_24300 0.11 -1.5
5,187,142 + IAI46_24300 0.14 +0.5
5,187,149 + IAI46_24300 0.14 -0.0
5,187,149 + IAI46_24300 0.14 +1.1
5,187,150 - IAI46_24300 0.15 -1.0
5,187,188 + IAI46_24300 0.20 +1.1
5,187,189 - IAI46_24300 0.20 -1.3
5,187,189 - IAI46_24300 0.20 -1.2
5,187,189 - IAI46_24300 0.20 +0.7
5,187,215 - IAI46_24300 0.23 -0.9
5,187,267 + IAI46_24300 0.30 +3.7
5,187,267 + IAI46_24300 0.30 -0.3
5,187,268 - IAI46_24300 0.30 -0.2
5,187,271 + IAI46_24300 0.31 -0.0
5,187,271 + IAI46_24300 0.31 -0.3
5,187,272 - IAI46_24300 0.31 +0.6
5,187,272 - IAI46_24300 0.31 -0.4
5,187,272 - IAI46_24300 0.31 -0.9
5,187,272 - IAI46_24300 0.31 -1.2
5,187,372 - IAI46_24300 0.44 -1.4
5,187,380 + IAI46_24300 0.45 -0.4
5,187,381 - IAI46_24300 0.45 -0.8
5,187,385 - IAI46_24300 0.46 +0.6
5,187,426 - IAI46_24300 0.51 +0.9
5,187,426 - IAI46_24300 0.51 -1.4
5,187,435 + IAI46_24300 0.52 -0.5
5,187,461 + IAI46_24300 0.56 +0.1
5,187,461 + IAI46_24300 0.56 -0.2
5,187,461 + IAI46_24300 0.56 +0.5
5,187,461 + IAI46_24300 0.56 +0.0
5,187,461 + IAI46_24300 0.56 -0.5
5,187,462 - IAI46_24300 0.56 -0.2
5,187,462 - IAI46_24300 0.56 +0.1
5,187,462 - IAI46_24300 0.56 -1.1
5,187,462 - IAI46_24300 0.56 -1.7
5,187,467 + IAI46_24300 0.56 -0.7
5,187,467 + IAI46_24300 0.56 +0.1
5,187,467 + IAI46_24300 0.56 -1.0
5,187,467 + IAI46_24300 0.56 +0.6
5,187,467 + IAI46_24300 0.56 +0.4
5,187,467 + IAI46_24300 0.56 -0.8
5,187,467 + IAI46_24300 0.56 -0.6
5,187,468 - IAI46_24300 0.57 -0.0
5,187,468 - IAI46_24300 0.57 -1.7
5,187,481 + IAI46_24300 0.58 -0.4
5,187,523 - IAI46_24300 0.64 +0.6
5,187,523 - IAI46_24300 0.64 +0.3
5,187,523 - IAI46_24300 0.64 -0.2
5,187,523 - IAI46_24300 0.64 +0.2
5,187,523 - IAI46_24300 0.64 -0.0
5,187,571 - IAI46_24300 0.70 +0.4
5,187,571 - IAI46_24300 0.70 -0.3
5,187,577 + IAI46_24300 0.71 -0.0
5,187,577 + IAI46_24300 0.71 +0.2
5,187,578 - IAI46_24300 0.71 -0.5
5,187,578 - IAI46_24300 0.71 +1.3
5,187,581 + IAI46_24300 0.71 -2.1
5,187,581 + IAI46_24300 0.71 +1.3
5,187,581 + IAI46_24300 0.71 -0.3
5,187,581 + IAI46_24300 0.71 +0.7
5,187,581 + IAI46_24300 0.71 +1.4
5,187,581 + IAI46_24300 0.71 +0.6
5,187,581 + IAI46_24300 0.71 +0.8
5,187,582 - IAI46_24300 0.72 +1.2
5,187,582 - IAI46_24300 0.72 +0.4
5,187,582 - IAI46_24300 0.72 +0.8
5,187,582 - IAI46_24300 0.72 -0.2
5,187,594 - IAI46_24300 0.73 -0.7
5,187,641 - IAI46_24300 0.79 -0.6
5,187,743 + +0.0
5,187,744 - -0.4

Or see this region's nucleotide sequence