Strain Fitness in Serratia liquefaciens MT49 around IAI46_23835

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23825 and IAI46_23830 are separated by 42 nucleotidesIAI46_23830 and IAI46_23835 are separated by 67 nucleotidesIAI46_23835 and IAI46_23840 are separated by 185 nucleotides IAI46_23825: IAI46_23825 - pimeloyl-ACP methyl ester esterase BioH, at 5,066,683 to 5,067,459 _23825 IAI46_23830: IAI46_23830 - DNA utilization protein GntX, at 5,067,502 to 5,068,185 _23830 IAI46_23835: IAI46_23835 - Fe-S biogenesis protein NfuA, at 5,068,253 to 5,068,828 _23835 IAI46_23840: IAI46_23840 - 4-alpha-glucanotransferase, at 5,069,014 to 5,071,104 _23840 Position (kb) 5068 5069Strain fitness (log2 ratio) -2 -1 0 1 2at 5067.285 kb on + strand, within IAI46_23825at 5067.286 kb on - strand, within IAI46_23825at 5067.433 kb on + strandat 5067.434 kb on - strandat 5067.447 kb on - strandat 5067.501 kb on + strandat 5067.501 kb on + strandat 5067.501 kb on + strandat 5067.502 kb on - strandat 5067.502 kb on - strandat 5067.502 kb on - strandat 5067.506 kb on + strandat 5067.530 kb on + strandat 5067.531 kb on - strandat 5067.531 kb on - strandat 5067.553 kb on + strandat 5067.554 kb on - strandat 5067.564 kb on + strandat 5067.574 kb on + strand, within IAI46_23830at 5067.710 kb on - strand, within IAI46_23830at 5067.826 kb on + strand, within IAI46_23830at 5067.843 kb on + strand, within IAI46_23830at 5067.863 kb on + strand, within IAI46_23830at 5067.863 kb on + strand, within IAI46_23830at 5067.864 kb on - strand, within IAI46_23830at 5067.893 kb on - strand, within IAI46_23830at 5067.894 kb on + strand, within IAI46_23830at 5067.976 kb on - strand, within IAI46_23830at 5068.105 kb on - strand, within IAI46_23830at 5068.105 kb on - strand, within IAI46_23830at 5068.183 kb on + strandat 5068.186 kb on + strandat 5068.187 kb on - strandat 5068.207 kb on - strandat 5068.208 kb on + strandat 5068.247 kb on - strandat 5068.261 kb on + strandat 5068.262 kb on - strandat 5068.270 kb on + strandat 5068.333 kb on - strand, within IAI46_23835at 5068.380 kb on - strand, within IAI46_23835at 5068.380 kb on - strand, within IAI46_23835at 5068.443 kb on - strand, within IAI46_23835at 5068.467 kb on - strand, within IAI46_23835at 5068.554 kb on + strand, within IAI46_23835at 5068.589 kb on + strand, within IAI46_23835at 5068.589 kb on + strand, within IAI46_23835at 5068.820 kb on + strandat 5068.820 kb on + strandat 5068.820 kb on + strandat 5068.820 kb on + strandat 5068.820 kb on + strandat 5068.821 kb on - strandat 5068.823 kb on + strandat 5068.823 kb on + strandat 5068.823 kb on + strandat 5068.824 kb on - strandat 5068.824 kb on - strandat 5068.824 kb on - strandat 5068.824 kb on - strandat 5068.824 kb on - strandat 5068.830 kb on - strandat 5068.838 kb on + strandat 5068.839 kb on - strandat 5068.873 kb on + strandat 5068.874 kb on - strandat 5068.886 kb on + strandat 5068.886 kb on + strandat 5068.886 kb on + strandat 5068.925 kb on + strandat 5068.925 kb on + strandat 5068.926 kb on - strandat 5068.941 kb on + strandat 5068.942 kb on - strandat 5068.942 kb on - strandat 5068.951 kb on - strandat 5068.954 kb on + strandat 5068.954 kb on + strandat 5068.954 kb on + strandat 5068.954 kb on + strandat 5068.955 kb on - strandat 5068.955 kb on - strandat 5068.955 kb on - strandat 5068.973 kb on + strandat 5068.973 kb on + strandat 5068.973 kb on + strandat 5068.974 kb on - strandat 5068.974 kb on - strandat 5068.974 kb on - strandat 5068.997 kb on + strandat 5068.998 kb on - strandat 5068.998 kb on - strandat 5068.998 kb on - strandat 5069.152 kb on - strandat 5069.152 kb on - strandat 5069.225 kb on + strand, within IAI46_23840at 5069.225 kb on + strand, within IAI46_23840at 5069.225 kb on + strand, within IAI46_23840at 5069.226 kb on - strand, within IAI46_23840at 5069.226 kb on - strand, within IAI46_23840at 5069.245 kb on - strand, within IAI46_23840at 5069.259 kb on + strand, within IAI46_23840at 5069.259 kb on + strand, within IAI46_23840at 5069.259 kb on + strand, within IAI46_23840at 5069.260 kb on - strand, within IAI46_23840at 5069.306 kb on + strand, within IAI46_23840at 5069.306 kb on + strand, within IAI46_23840at 5069.306 kb on + strand, within IAI46_23840at 5069.326 kb on + strand, within IAI46_23840at 5069.388 kb on - strand, within IAI46_23840at 5069.432 kb on + strand, within IAI46_23840at 5069.489 kb on + strand, within IAI46_23840at 5069.490 kb on - strand, within IAI46_23840at 5069.534 kb on + strand, within IAI46_23840at 5069.535 kb on - strand, within IAI46_23840at 5069.546 kb on + strand, within IAI46_23840at 5069.552 kb on + strand, within IAI46_23840at 5069.552 kb on + strand, within IAI46_23840at 5069.553 kb on - strand, within IAI46_23840at 5069.687 kb on + strand, within IAI46_23840at 5069.757 kb on + strand, within IAI46_23840at 5069.757 kb on + strand, within IAI46_23840at 5069.781 kb on + strand, within IAI46_23840at 5069.782 kb on - strand, within IAI46_23840at 5069.782 kb on - strand, within IAI46_23840at 5069.782 kb on - strand, within IAI46_23840at 5069.802 kb on + strand, within IAI46_23840at 5069.814 kb on - strand, within IAI46_23840

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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5,067,285 + IAI46_23825 0.77 -1.0
5,067,286 - IAI46_23825 0.78 +0.7
5,067,433 + +0.6
5,067,434 - +0.3
5,067,447 - +0.9
5,067,501 + +0.7
5,067,501 + +0.1
5,067,501 + -0.6
5,067,502 - -0.5
5,067,502 - -0.5
5,067,502 - +0.5
5,067,506 + -0.8
5,067,530 + +0.0
5,067,531 - +0.5
5,067,531 - -0.9
5,067,553 + -0.8
5,067,554 - -0.3
5,067,564 + -0.3
5,067,574 + IAI46_23830 0.11 +0.3
5,067,710 - IAI46_23830 0.30 +0.0
5,067,826 + IAI46_23830 0.47 +0.1
5,067,843 + IAI46_23830 0.50 +0.4
5,067,863 + IAI46_23830 0.53 -0.4
5,067,863 + IAI46_23830 0.53 -0.3
5,067,864 - IAI46_23830 0.53 -0.1
5,067,893 - IAI46_23830 0.57 -1.2
5,067,894 + IAI46_23830 0.57 -0.1
5,067,976 - IAI46_23830 0.69 -0.5
5,068,105 - IAI46_23830 0.88 +0.6
5,068,105 - IAI46_23830 0.88 +0.5
5,068,183 + +0.6
5,068,186 + +0.1
5,068,187 - -0.1
5,068,207 - +1.2
5,068,208 + -0.7
5,068,247 - +0.6
5,068,261 + +1.5
5,068,262 - +1.0
5,068,270 + +1.1
5,068,333 - IAI46_23835 0.14 +0.6
5,068,380 - IAI46_23835 0.22 +1.8
5,068,380 - IAI46_23835 0.22 -0.4
5,068,443 - IAI46_23835 0.33 -0.6
5,068,467 - IAI46_23835 0.37 +0.5
5,068,554 + IAI46_23835 0.52 +1.5
5,068,589 + IAI46_23835 0.58 +1.2
5,068,589 + IAI46_23835 0.58 -0.3
5,068,820 + -0.1
5,068,820 + +0.2
5,068,820 + +0.2
5,068,820 + -0.4
5,068,820 + +0.5
5,068,821 - -0.3
5,068,823 + +1.2
5,068,823 + +0.5
5,068,823 + -0.1
5,068,824 - -0.9
5,068,824 - +1.0
5,068,824 - +0.2
5,068,824 - +0.5
5,068,824 - -0.2
5,068,830 - +0.6
5,068,838 + -0.5
5,068,839 - +0.1
5,068,873 + +0.6
5,068,874 - +0.4
5,068,886 + -0.5
5,068,886 + +0.7
5,068,886 + -0.6
5,068,925 + -0.5
5,068,925 + -0.6
5,068,926 - +0.1
5,068,941 + -1.3
5,068,942 - -0.1
5,068,942 - +0.5
5,068,951 - +0.0
5,068,954 + -0.8
5,068,954 + -0.2
5,068,954 + -0.1
5,068,954 + +0.0
5,068,955 - +0.4
5,068,955 - +1.7
5,068,955 - +0.1
5,068,973 + -0.2
5,068,973 + -0.2
5,068,973 + -0.5
5,068,974 - +0.0
5,068,974 - -1.1
5,068,974 - +0.8
5,068,997 + +0.0
5,068,998 - -0.4
5,068,998 - +1.7
5,068,998 - -0.2
5,069,152 - +0.1
5,069,152 - -0.4
5,069,225 + IAI46_23840 0.10 -0.2
5,069,225 + IAI46_23840 0.10 -0.7
5,069,225 + IAI46_23840 0.10 +0.4
5,069,226 - IAI46_23840 0.10 +0.0
5,069,226 - IAI46_23840 0.10 +0.3
5,069,245 - IAI46_23840 0.11 +0.5
5,069,259 + IAI46_23840 0.12 -0.4
5,069,259 + IAI46_23840 0.12 +0.7
5,069,259 + IAI46_23840 0.12 +0.2
5,069,260 - IAI46_23840 0.12 +0.4
5,069,306 + IAI46_23840 0.14 -1.8
5,069,306 + IAI46_23840 0.14 +1.6
5,069,306 + IAI46_23840 0.14 +0.4
5,069,326 + IAI46_23840 0.15 -1.1
5,069,388 - IAI46_23840 0.18 +0.0
5,069,432 + IAI46_23840 0.20 -0.5
5,069,489 + IAI46_23840 0.23 -1.9
5,069,490 - IAI46_23840 0.23 +0.1
5,069,534 + IAI46_23840 0.25 -0.8
5,069,535 - IAI46_23840 0.25 +0.6
5,069,546 + IAI46_23840 0.25 +0.3
5,069,552 + IAI46_23840 0.26 +0.1
5,069,552 + IAI46_23840 0.26 -0.1
5,069,553 - IAI46_23840 0.26 -0.3
5,069,687 + IAI46_23840 0.32 +0.1
5,069,757 + IAI46_23840 0.36 -0.1
5,069,757 + IAI46_23840 0.36 +0.5
5,069,781 + IAI46_23840 0.37 -0.3
5,069,782 - IAI46_23840 0.37 -0.5
5,069,782 - IAI46_23840 0.37 -0.0
5,069,782 - IAI46_23840 0.37 +0.1
5,069,802 + IAI46_23840 0.38 +0.0
5,069,814 - IAI46_23840 0.38 +1.5

Or see this region's nucleotide sequence