Strain Fitness in Serratia liquefaciens MT49 around IAI46_23275

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23270 and IAI46_23275 are separated by 73 nucleotidesIAI46_23275 and IAI46_23280 are separated by 77 nucleotides IAI46_23270: IAI46_23270 - methionyl-tRNA formyltransferase, at 4,972,097 to 4,973,041 _23270 IAI46_23275: IAI46_23275 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 4,973,115 to 4,974,404 _23275 IAI46_23280: IAI46_23280 - Trk system potassium transporter TrkA, at 4,974,482 to 4,975,858 _23280 Position (kb) 4973 4974 4975Strain fitness (log2 ratio) -2 -1 0 1at 4973.020 kb on + strandat 4973.020 kb on + strandat 4973.039 kb on + strandat 4973.039 kb on + strandat 4973.040 kb on - strandat 4973.087 kb on + strandat 4973.109 kb on + strandat 4973.127 kb on + strandat 4973.128 kb on - strandat 4973.128 kb on - strandat 4973.192 kb on + strandat 4973.192 kb on + strandat 4973.254 kb on + strand, within IAI46_23275at 4973.254 kb on + strand, within IAI46_23275at 4973.255 kb on - strand, within IAI46_23275at 4973.255 kb on - strand, within IAI46_23275at 4973.297 kb on + strand, within IAI46_23275at 4973.297 kb on + strand, within IAI46_23275at 4973.298 kb on - strand, within IAI46_23275at 4973.298 kb on - strand, within IAI46_23275at 4973.349 kb on + strand, within IAI46_23275at 4973.349 kb on + strand, within IAI46_23275at 4973.349 kb on + strand, within IAI46_23275at 4973.370 kb on + strand, within IAI46_23275at 4973.371 kb on - strand, within IAI46_23275at 4973.382 kb on + strand, within IAI46_23275at 4973.382 kb on + strand, within IAI46_23275at 4973.382 kb on + strand, within IAI46_23275at 4973.382 kb on + strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.383 kb on - strand, within IAI46_23275at 4973.384 kb on + strand, within IAI46_23275at 4973.423 kb on - strand, within IAI46_23275at 4973.423 kb on - strand, within IAI46_23275at 4973.476 kb on + strand, within IAI46_23275at 4973.477 kb on - strand, within IAI46_23275at 4973.477 kb on - strand, within IAI46_23275at 4973.528 kb on + strand, within IAI46_23275at 4973.571 kb on - strand, within IAI46_23275at 4973.702 kb on + strand, within IAI46_23275at 4973.740 kb on + strand, within IAI46_23275at 4973.740 kb on + strand, within IAI46_23275at 4973.904 kb on - strand, within IAI46_23275at 4973.933 kb on + strand, within IAI46_23275at 4973.998 kb on + strand, within IAI46_23275at 4974.029 kb on + strand, within IAI46_23275at 4974.029 kb on + strand, within IAI46_23275at 4974.030 kb on - strand, within IAI46_23275at 4974.030 kb on - strand, within IAI46_23275at 4974.030 kb on - strand, within IAI46_23275at 4974.030 kb on - strand, within IAI46_23275at 4974.054 kb on - strand, within IAI46_23275at 4974.182 kb on + strand, within IAI46_23275at 4974.183 kb on - strand, within IAI46_23275at 4974.226 kb on + strand, within IAI46_23275at 4974.226 kb on + strand, within IAI46_23275at 4974.227 kb on - strand, within IAI46_23275at 4974.227 kb on - strand, within IAI46_23275at 4974.227 kb on - strand, within IAI46_23275at 4974.228 kb on + strand, within IAI46_23275at 4974.228 kb on + strand, within IAI46_23275at 4974.228 kb on + strand, within IAI46_23275at 4974.228 kb on + strand, within IAI46_23275at 4974.229 kb on - strand, within IAI46_23275at 4974.229 kb on - strand, within IAI46_23275at 4974.229 kb on - strand, within IAI46_23275at 4974.229 kb on - strand, within IAI46_23275at 4974.234 kb on - strand, within IAI46_23275at 4974.381 kb on + strandat 4974.386 kb on + strandat 4974.396 kb on - strandat 4974.402 kb on + strandat 4974.406 kb on + strandat 4974.406 kb on + strandat 4974.406 kb on + strandat 4974.754 kb on + strand, within IAI46_23280at 4974.794 kb on - strand, within IAI46_23280at 4974.954 kb on + strand, within IAI46_23280

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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4,973,020 + -0.2
4,973,020 + -0.0
4,973,039 + +0.0
4,973,039 + +1.1
4,973,040 - +0.1
4,973,087 + -2.4
4,973,109 + -0.1
4,973,127 + +1.1
4,973,128 - +0.3
4,973,128 - +0.7
4,973,192 + +0.1
4,973,192 + -0.1
4,973,254 + IAI46_23275 0.11 +0.4
4,973,254 + IAI46_23275 0.11 -0.2
4,973,255 - IAI46_23275 0.11 -0.7
4,973,255 - IAI46_23275 0.11 +0.8
4,973,297 + IAI46_23275 0.14 +0.1
4,973,297 + IAI46_23275 0.14 +0.4
4,973,298 - IAI46_23275 0.14 +0.1
4,973,298 - IAI46_23275 0.14 +0.1
4,973,349 + IAI46_23275 0.18 -0.0
4,973,349 + IAI46_23275 0.18 +0.2
4,973,349 + IAI46_23275 0.18 +0.3
4,973,370 + IAI46_23275 0.20 +0.4
4,973,371 - IAI46_23275 0.20 -0.9
4,973,382 + IAI46_23275 0.21 -1.1
4,973,382 + IAI46_23275 0.21 +0.8
4,973,382 + IAI46_23275 0.21 -0.2
4,973,382 + IAI46_23275 0.21 +0.0
4,973,383 - IAI46_23275 0.21 -0.2
4,973,383 - IAI46_23275 0.21 +1.1
4,973,383 - IAI46_23275 0.21 +0.4
4,973,383 - IAI46_23275 0.21 +0.2
4,973,383 - IAI46_23275 0.21 -0.9
4,973,383 - IAI46_23275 0.21 -0.2
4,973,383 - IAI46_23275 0.21 +0.3
4,973,384 + IAI46_23275 0.21 +0.3
4,973,423 - IAI46_23275 0.24 -0.7
4,973,423 - IAI46_23275 0.24 +0.3
4,973,476 + IAI46_23275 0.28 -0.3
4,973,477 - IAI46_23275 0.28 -0.1
4,973,477 - IAI46_23275 0.28 -0.0
4,973,528 + IAI46_23275 0.32 -0.3
4,973,571 - IAI46_23275 0.35 +0.1
4,973,702 + IAI46_23275 0.46 -0.1
4,973,740 + IAI46_23275 0.48 +1.5
4,973,740 + IAI46_23275 0.48 +0.5
4,973,904 - IAI46_23275 0.61 -0.6
4,973,933 + IAI46_23275 0.63 +1.2
4,973,998 + IAI46_23275 0.68 +1.5
4,974,029 + IAI46_23275 0.71 -1.1
4,974,029 + IAI46_23275 0.71 +0.3
4,974,030 - IAI46_23275 0.71 +0.2
4,974,030 - IAI46_23275 0.71 +1.1
4,974,030 - IAI46_23275 0.71 -0.0
4,974,030 - IAI46_23275 0.71 -0.1
4,974,054 - IAI46_23275 0.73 +1.2
4,974,182 + IAI46_23275 0.83 +0.5
4,974,183 - IAI46_23275 0.83 +0.6
4,974,226 + IAI46_23275 0.86 -0.2
4,974,226 + IAI46_23275 0.86 +0.1
4,974,227 - IAI46_23275 0.86 +0.2
4,974,227 - IAI46_23275 0.86 -0.4
4,974,227 - IAI46_23275 0.86 +0.3
4,974,228 + IAI46_23275 0.86 +0.4
4,974,228 + IAI46_23275 0.86 -0.1
4,974,228 + IAI46_23275 0.86 -0.6
4,974,228 + IAI46_23275 0.86 +0.0
4,974,229 - IAI46_23275 0.86 -0.2
4,974,229 - IAI46_23275 0.86 +0.8
4,974,229 - IAI46_23275 0.86 -1.6
4,974,229 - IAI46_23275 0.86 +0.5
4,974,234 - IAI46_23275 0.87 -0.2
4,974,381 + -1.2
4,974,386 + -0.4
4,974,396 - +0.7
4,974,402 + +0.1
4,974,406 + -0.3
4,974,406 + -0.0
4,974,406 + -0.1
4,974,754 + IAI46_23280 0.20 +1.4
4,974,794 - IAI46_23280 0.23 +0.4
4,974,954 + IAI46_23280 0.34 +0.4

Or see this region's nucleotide sequence