Strain Fitness in Serratia liquefaciens MT49 around IAI46_22305

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22300 and IAI46_22305 overlap by 4 nucleotidesIAI46_22305 and IAI46_22310 are separated by 51 nucleotidesIAI46_22310 and IAI46_22315 are separated by 9 nucleotides IAI46_22300: IAI46_22300 - penicillin-binding protein activator, at 4,749,024 to 4,751,054 _22300 IAI46_22305: IAI46_22305 - YraN family protein, at 4,751,051 to 4,751,404 _22305 IAI46_22310: IAI46_22310 - DnaA initiator-associating protein DiaA, at 4,751,456 to 4,752,046 _22310 IAI46_22315: IAI46_22315 - divisome-associated lipoprotein YraP, at 4,752,056 to 4,752,631 _22315 Position (kb) 4751 4752Strain fitness (log2 ratio) -2 -1 0 1 2at 4750.070 kb on + strand, within IAI46_22300at 4750.101 kb on - strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.107 kb on + strand, within IAI46_22300at 4750.108 kb on - strand, within IAI46_22300at 4750.108 kb on - strand, within IAI46_22300at 4750.108 kb on - strand, within IAI46_22300at 4750.108 kb on - strand, within IAI46_22300at 4750.108 kb on - strand, within IAI46_22300at 4750.112 kb on + strand, within IAI46_22300at 4750.112 kb on + strand, within IAI46_22300at 4750.112 kb on + strand, within IAI46_22300at 4750.112 kb on + strand, within IAI46_22300at 4750.113 kb on - strand, within IAI46_22300at 4750.113 kb on - strand, within IAI46_22300at 4750.287 kb on + strand, within IAI46_22300at 4750.412 kb on + strand, within IAI46_22300at 4750.557 kb on - strand, within IAI46_22300at 4750.622 kb on - strand, within IAI46_22300at 4750.622 kb on - strand, within IAI46_22300at 4750.632 kb on + strand, within IAI46_22300at 4750.632 kb on + strand, within IAI46_22300at 4750.633 kb on - strand, within IAI46_22300at 4750.633 kb on - strand, within IAI46_22300at 4750.633 kb on - strand, within IAI46_22300at 4750.633 kb on - strand, within IAI46_22300at 4750.716 kb on + strand, within IAI46_22300at 4750.717 kb on - strand, within IAI46_22300at 4750.717 kb on - strand, within IAI46_22300at 4750.734 kb on + strand, within IAI46_22300at 4750.735 kb on - strand, within IAI46_22300at 4750.735 kb on - strand, within IAI46_22300at 4750.825 kb on + strand, within IAI46_22300at 4750.826 kb on - strand, within IAI46_22300at 4750.826 kb on - strand, within IAI46_22300at 4750.860 kb on + strandat 4751.078 kb on + strandat 4751.079 kb on - strandat 4751.081 kb on + strandat 4751.085 kb on + strandat 4751.099 kb on + strand, within IAI46_22305at 4751.099 kb on + strand, within IAI46_22305at 4751.100 kb on - strand, within IAI46_22305at 4751.140 kb on + strand, within IAI46_22305at 4751.140 kb on + strand, within IAI46_22305at 4751.141 kb on - strand, within IAI46_22305at 4751.205 kb on + strand, within IAI46_22305at 4751.205 kb on + strand, within IAI46_22305at 4751.205 kb on + strand, within IAI46_22305at 4751.206 kb on - strand, within IAI46_22305at 4751.251 kb on + strand, within IAI46_22305at 4751.252 kb on - strand, within IAI46_22305at 4751.252 kb on - strand, within IAI46_22305at 4751.402 kb on + strandat 4751.413 kb on + strandat 4751.413 kb on + strandat 4751.413 kb on + strandat 4751.413 kb on + strandat 4751.440 kb on - strandat 4751.447 kb on + strandat 4751.447 kb on + strandat 4751.450 kb on + strandat 4751.451 kb on - strandat 4751.465 kb on - strandat 4751.470 kb on + strandat 4751.471 kb on - strandat 4751.471 kb on - strandat 4751.581 kb on + strand, within IAI46_22310at 4751.581 kb on + strand, within IAI46_22310at 4751.790 kb on + strand, within IAI46_22310at 4751.790 kb on + strand, within IAI46_22310at 4751.790 kb on + strand, within IAI46_22310at 4751.791 kb on - strand, within IAI46_22310at 4751.882 kb on - strand, within IAI46_22310at 4751.981 kb on - strand, within IAI46_22310at 4751.981 kb on - strand, within IAI46_22310at 4751.992 kb on + strandat 4751.993 kb on - strandat 4752.013 kb on - strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.020 kb on - strandat 4752.063 kb on + strandat 4752.064 kb on - strandat 4752.103 kb on - strandat 4752.112 kb on + strandat 4752.112 kb on + strandat 4752.113 kb on - strandat 4752.152 kb on - strand, within IAI46_22315at 4752.189 kb on + strand, within IAI46_22315at 4752.377 kb on + strand, within IAI46_22315

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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4,750,070 + IAI46_22300 0.52 -1.0
4,750,101 - IAI46_22300 0.53 -0.1
4,750,107 + IAI46_22300 0.53 +0.9
4,750,107 + IAI46_22300 0.53 +0.6
4,750,107 + IAI46_22300 0.53 -0.6
4,750,107 + IAI46_22300 0.53 +0.1
4,750,107 + IAI46_22300 0.53 +0.1
4,750,107 + IAI46_22300 0.53 -0.2
4,750,107 + IAI46_22300 0.53 +0.4
4,750,107 + IAI46_22300 0.53 +0.5
4,750,108 - IAI46_22300 0.53 -0.3
4,750,108 - IAI46_22300 0.53 +0.1
4,750,108 - IAI46_22300 0.53 -0.1
4,750,108 - IAI46_22300 0.53 -0.6
4,750,108 - IAI46_22300 0.53 +0.8
4,750,112 + IAI46_22300 0.54 +0.3
4,750,112 + IAI46_22300 0.54 +0.9
4,750,112 + IAI46_22300 0.54 +0.7
4,750,112 + IAI46_22300 0.54 +0.3
4,750,113 - IAI46_22300 0.54 +0.3
4,750,113 - IAI46_22300 0.54 +0.8
4,750,287 + IAI46_22300 0.62 +0.3
4,750,412 + IAI46_22300 0.68 -0.8
4,750,557 - IAI46_22300 0.75 +0.3
4,750,622 - IAI46_22300 0.79 +0.4
4,750,622 - IAI46_22300 0.79 -0.4
4,750,632 + IAI46_22300 0.79 +0.0
4,750,632 + IAI46_22300 0.79 +0.1
4,750,633 - IAI46_22300 0.79 +0.2
4,750,633 - IAI46_22300 0.79 -0.7
4,750,633 - IAI46_22300 0.79 -0.2
4,750,633 - IAI46_22300 0.79 -0.8
4,750,716 + IAI46_22300 0.83 -0.1
4,750,717 - IAI46_22300 0.83 +0.0
4,750,717 - IAI46_22300 0.83 +0.4
4,750,734 + IAI46_22300 0.84 -0.6
4,750,735 - IAI46_22300 0.84 -0.0
4,750,735 - IAI46_22300 0.84 +0.0
4,750,825 + IAI46_22300 0.89 -0.5
4,750,826 - IAI46_22300 0.89 -0.3
4,750,826 - IAI46_22300 0.89 +0.8
4,750,860 + +0.8
4,751,078 + +0.1
4,751,079 - +0.5
4,751,081 + +0.9
4,751,085 + -2.4
4,751,099 + IAI46_22305 0.14 -0.6
4,751,099 + IAI46_22305 0.14 +0.4
4,751,100 - IAI46_22305 0.14 +0.1
4,751,140 + IAI46_22305 0.25 +0.2
4,751,140 + IAI46_22305 0.25 -0.4
4,751,141 - IAI46_22305 0.25 -1.0
4,751,205 + IAI46_22305 0.44 -0.1
4,751,205 + IAI46_22305 0.44 -0.9
4,751,205 + IAI46_22305 0.44 +0.3
4,751,206 - IAI46_22305 0.44 -1.3
4,751,251 + IAI46_22305 0.56 -0.6
4,751,252 - IAI46_22305 0.57 -0.9
4,751,252 - IAI46_22305 0.57 -0.4
4,751,402 + -1.0
4,751,413 + -0.2
4,751,413 + +0.0
4,751,413 + -0.6
4,751,413 + -1.2
4,751,440 - +0.6
4,751,447 + +0.9
4,751,447 + -0.4
4,751,450 + +1.9
4,751,451 - -0.4
4,751,465 - -0.5
4,751,470 + +1.0
4,751,471 - +0.2
4,751,471 - -1.8
4,751,581 + IAI46_22310 0.21 +0.0
4,751,581 + IAI46_22310 0.21 +0.2
4,751,790 + IAI46_22310 0.57 -0.8
4,751,790 + IAI46_22310 0.57 +0.7
4,751,790 + IAI46_22310 0.57 +0.2
4,751,791 - IAI46_22310 0.57 +0.1
4,751,882 - IAI46_22310 0.72 +0.0
4,751,981 - IAI46_22310 0.89 +0.2
4,751,981 - IAI46_22310 0.89 +1.0
4,751,992 + -0.6
4,751,993 - -0.5
4,752,013 - +0.2
4,752,019 + -1.5
4,752,019 + +0.0
4,752,019 + +0.7
4,752,019 + +0.0
4,752,019 + +0.1
4,752,019 + +1.1
4,752,019 + +0.2
4,752,019 + +1.7
4,752,019 + -1.3
4,752,019 + +0.6
4,752,019 + +0.3
4,752,020 - +0.2
4,752,063 + +0.5
4,752,064 - +0.2
4,752,103 - -1.2
4,752,112 + -0.0
4,752,112 + +0.8
4,752,113 - +0.7
4,752,152 - IAI46_22315 0.17 +0.5
4,752,189 + IAI46_22315 0.23 +0.9
4,752,377 + IAI46_22315 0.56 +0.5

Or see this region's nucleotide sequence