Strain Fitness in Serratia liquefaciens MT49 around IAI46_21690

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21685 and IAI46_21690 overlap by 1 nucleotidesIAI46_21690 and IAI46_21695 are separated by 21 nucleotides IAI46_21685: IAI46_21685 - PTS sucrose transporter subunit IIBC, at 4,611,422 to 4,612,792 _21685 IAI46_21690: IAI46_21690 - sucrose-6-phosphate hydrolase, at 4,612,792 to 4,614,201 _21690 IAI46_21695: IAI46_21695 - LacI family DNA-binding transcriptional regulator, at 4,614,223 to 4,615,266 _21695 Position (kb) 4612 4613 4614 4615Strain fitness (log2 ratio) -2 -1 0 1 2at 4611.901 kb on - strand, within IAI46_21685at 4611.951 kb on - strand, within IAI46_21685at 4612.081 kb on - strand, within IAI46_21685at 4612.081 kb on - strand, within IAI46_21685at 4612.081 kb on - strand, within IAI46_21685at 4612.109 kb on - strand, within IAI46_21685at 4612.109 kb on - strand, within IAI46_21685at 4612.117 kb on - strand, within IAI46_21685at 4612.135 kb on + strand, within IAI46_21685at 4612.135 kb on + strand, within IAI46_21685at 4612.136 kb on - strand, within IAI46_21685at 4612.319 kb on + strand, within IAI46_21685at 4612.384 kb on + strand, within IAI46_21685at 4612.402 kb on + strand, within IAI46_21685at 4612.537 kb on + strand, within IAI46_21685at 4612.712 kb on + strandat 4612.712 kb on + strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.715 kb on - strandat 4612.715 kb on - strandat 4612.802 kb on + strandat 4612.802 kb on + strandat 4612.803 kb on - strandat 4612.803 kb on - strandat 4612.926 kb on + strandat 4612.945 kb on + strand, within IAI46_21690at 4612.946 kb on - strand, within IAI46_21690at 4613.071 kb on + strand, within IAI46_21690at 4613.072 kb on - strand, within IAI46_21690at 4613.072 kb on - strand, within IAI46_21690at 4613.072 kb on - strand, within IAI46_21690at 4613.090 kb on - strand, within IAI46_21690at 4613.106 kb on - strand, within IAI46_21690at 4613.135 kb on - strand, within IAI46_21690at 4613.148 kb on - strand, within IAI46_21690at 4613.153 kb on - strand, within IAI46_21690at 4613.177 kb on - strand, within IAI46_21690at 4613.213 kb on - strand, within IAI46_21690at 4613.302 kb on + strand, within IAI46_21690at 4613.302 kb on + strand, within IAI46_21690at 4613.302 kb on + strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.434 kb on + strand, within IAI46_21690at 4613.434 kb on + strand, within IAI46_21690at 4613.434 kb on + strand, within IAI46_21690at 4613.435 kb on - strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.437 kb on - strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.485 kb on - strand, within IAI46_21690at 4613.525 kb on - strand, within IAI46_21690at 4613.629 kb on + strand, within IAI46_21690at 4613.729 kb on - strand, within IAI46_21690at 4613.729 kb on - strand, within IAI46_21690at 4613.775 kb on + strand, within IAI46_21690at 4614.044 kb on + strand, within IAI46_21690at 4614.044 kb on + strand, within IAI46_21690at 4614.044 kb on + strand, within IAI46_21690at 4614.045 kb on - strand, within IAI46_21690at 4614.075 kb on + strandat 4614.110 kb on - strandat 4614.134 kb on + strandat 4614.135 kb on - strandat 4614.148 kb on - strandat 4614.194 kb on + strandat 4614.195 kb on - strandat 4614.195 kb on - strandat 4614.265 kb on - strandat 4614.312 kb on + strandat 4614.313 kb on - strandat 4614.331 kb on + strand, within IAI46_21695at 4614.389 kb on - strand, within IAI46_21695at 4614.435 kb on + strand, within IAI46_21695at 4614.436 kb on - strand, within IAI46_21695at 4614.436 kb on - strand, within IAI46_21695at 4614.469 kb on + strand, within IAI46_21695at 4614.544 kb on - strand, within IAI46_21695at 4614.747 kb on + strand, within IAI46_21695at 4614.790 kb on + strand, within IAI46_21695at 4614.790 kb on + strand, within IAI46_21695at 4614.791 kb on - strand, within IAI46_21695at 4614.908 kb on - strand, within IAI46_21695at 4614.908 kb on - strand, within IAI46_21695at 4614.925 kb on + strand, within IAI46_21695at 4614.977 kb on + strand, within IAI46_21695at 4614.982 kb on - strand, within IAI46_21695at 4614.982 kb on - strand, within IAI46_21695at 4614.982 kb on - strand, within IAI46_21695at 4615.018 kb on + strand, within IAI46_21695at 4615.078 kb on + strand, within IAI46_21695at 4615.078 kb on + strand, within IAI46_21695

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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4,611,901 - IAI46_21685 0.35 -0.4
4,611,951 - IAI46_21685 0.39 -0.2
4,612,081 - IAI46_21685 0.48 +0.3
4,612,081 - IAI46_21685 0.48 -1.9
4,612,081 - IAI46_21685 0.48 +0.6
4,612,109 - IAI46_21685 0.50 -0.6
4,612,109 - IAI46_21685 0.50 +0.4
4,612,117 - IAI46_21685 0.51 -0.1
4,612,135 + IAI46_21685 0.52 +0.6
4,612,135 + IAI46_21685 0.52 -0.4
4,612,136 - IAI46_21685 0.52 +0.6
4,612,319 + IAI46_21685 0.65 +0.1
4,612,384 + IAI46_21685 0.70 -0.6
4,612,402 + IAI46_21685 0.71 -1.2
4,612,537 + IAI46_21685 0.81 +0.7
4,612,712 + -0.0
4,612,712 + +0.0
4,612,713 - -0.5
4,612,713 - -0.5
4,612,713 - +0.1
4,612,713 - +1.2
4,612,713 - -0.0
4,612,714 + +0.4
4,612,714 + -0.1
4,612,714 + -0.2
4,612,714 + -0.3
4,612,714 + +0.8
4,612,714 + -0.1
4,612,715 - -0.0
4,612,715 - +1.0
4,612,802 + -0.7
4,612,802 + -0.3
4,612,803 - +0.3
4,612,803 - -0.5
4,612,926 + +0.5
4,612,945 + IAI46_21690 0.11 +0.8
4,612,946 - IAI46_21690 0.11 +1.0
4,613,071 + IAI46_21690 0.20 -0.1
4,613,072 - IAI46_21690 0.20 +0.6
4,613,072 - IAI46_21690 0.20 -0.3
4,613,072 - IAI46_21690 0.20 +0.7
4,613,090 - IAI46_21690 0.21 -0.0
4,613,106 - IAI46_21690 0.22 +0.5
4,613,135 - IAI46_21690 0.24 +0.1
4,613,148 - IAI46_21690 0.25 +0.3
4,613,153 - IAI46_21690 0.26 +0.4
4,613,177 - IAI46_21690 0.27 +1.3
4,613,213 - IAI46_21690 0.30 -0.9
4,613,302 + IAI46_21690 0.36 +0.0
4,613,302 + IAI46_21690 0.36 +0.0
4,613,302 + IAI46_21690 0.36 -0.6
4,613,303 - IAI46_21690 0.36 -1.3
4,613,303 - IAI46_21690 0.36 -1.4
4,613,303 - IAI46_21690 0.36 -0.4
4,613,303 - IAI46_21690 0.36 +0.0
4,613,434 + IAI46_21690 0.46 +0.1
4,613,434 + IAI46_21690 0.46 +1.0
4,613,434 + IAI46_21690 0.46 -0.4
4,613,435 - IAI46_21690 0.46 -0.4
4,613,436 + IAI46_21690 0.46 -0.2
4,613,436 + IAI46_21690 0.46 -0.6
4,613,436 + IAI46_21690 0.46 +0.6
4,613,436 + IAI46_21690 0.46 -0.4
4,613,437 - IAI46_21690 0.46 -0.4
4,613,484 + IAI46_21690 0.49 +1.8
4,613,484 + IAI46_21690 0.49 -1.2
4,613,484 + IAI46_21690 0.49 +0.7
4,613,484 + IAI46_21690 0.49 -0.2
4,613,484 + IAI46_21690 0.49 +0.6
4,613,485 - IAI46_21690 0.49 -0.2
4,613,525 - IAI46_21690 0.52 +0.2
4,613,629 + IAI46_21690 0.59 -0.6
4,613,729 - IAI46_21690 0.66 +0.9
4,613,729 - IAI46_21690 0.66 +0.8
4,613,775 + IAI46_21690 0.70 -0.3
4,614,044 + IAI46_21690 0.89 +0.2
4,614,044 + IAI46_21690 0.89 +0.0
4,614,044 + IAI46_21690 0.89 +0.7
4,614,045 - IAI46_21690 0.89 +0.7
4,614,075 + +0.1
4,614,110 - -0.3
4,614,134 + -0.2
4,614,135 - -0.8
4,614,148 - -0.1
4,614,194 + -1.0
4,614,195 - +1.2
4,614,195 - +0.7
4,614,265 - +1.4
4,614,312 + -1.0
4,614,313 - +0.4
4,614,331 + IAI46_21695 0.10 +0.5
4,614,389 - IAI46_21695 0.16 +0.7
4,614,435 + IAI46_21695 0.20 +1.8
4,614,436 - IAI46_21695 0.20 -0.0
4,614,436 - IAI46_21695 0.20 +0.2
4,614,469 + IAI46_21695 0.24 +1.2
4,614,544 - IAI46_21695 0.31 +0.0
4,614,747 + IAI46_21695 0.50 +0.9
4,614,790 + IAI46_21695 0.54 -0.3
4,614,790 + IAI46_21695 0.54 -0.2
4,614,791 - IAI46_21695 0.54 -0.1
4,614,908 - IAI46_21695 0.66 -0.6
4,614,908 - IAI46_21695 0.66 +0.9
4,614,925 + IAI46_21695 0.67 +0.8
4,614,977 + IAI46_21695 0.72 +0.3
4,614,982 - IAI46_21695 0.73 -1.0
4,614,982 - IAI46_21695 0.73 +0.3
4,614,982 - IAI46_21695 0.73 +0.6
4,615,018 + IAI46_21695 0.76 +0.5
4,615,078 + IAI46_21695 0.82 -1.4
4,615,078 + IAI46_21695 0.82 -0.3

Or see this region's nucleotide sequence