Strain Fitness in Serratia liquefaciens MT49 around IAI46_21155

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21150 and IAI46_21155 are separated by 126 nucleotidesIAI46_21155 and IAI46_21160 are separated by 379 nucleotidesIAI46_21160 and IAI46_21165 are separated by 1 nucleotides IAI46_21150: IAI46_21150 - methionine adenosyltransferase, at 4,479,314 to 4,480,468 _21150 IAI46_21155: IAI46_21155 - Hok/Gef family protein, at 4,480,595 to 4,480,747 _21155 IAI46_21160: IAI46_21160 - helix-turn-helix domain-containing protein, at 4,481,127 to 4,481,411 _21160 IAI46_21165: IAI46_21165 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,481,413 to 4,481,745 _21165 Position (kb) 4480 4481Strain fitness (log2 ratio) -1 0 1at 4480.467 kb on - strandat 4480.467 kb on - strandat 4480.575 kb on - strandat 4480.575 kb on - strandat 4480.597 kb on - strandat 4480.612 kb on - strand, within IAI46_21155at 4480.679 kb on + strand, within IAI46_21155at 4480.679 kb on + strand, within IAI46_21155at 4480.694 kb on + strand, within IAI46_21155at 4480.697 kb on + strand, within IAI46_21155at 4480.697 kb on + strand, within IAI46_21155at 4480.697 kb on + strand, within IAI46_21155at 4480.698 kb on - strand, within IAI46_21155at 4480.711 kb on + strand, within IAI46_21155at 4480.724 kb on + strand, within IAI46_21155at 4480.786 kb on + strandat 4480.791 kb on + strandat 4480.791 kb on + strandat 4480.791 kb on + strandat 4480.792 kb on - strandat 4480.829 kb on + strandat 4480.829 kb on + strandat 4480.829 kb on + strandat 4480.829 kb on + strandat 4480.830 kb on - strandat 4480.830 kb on - strandat 4480.830 kb on - strandat 4480.830 kb on - strandat 4480.830 kb on - strandat 4480.832 kb on - strandat 4480.832 kb on - strandat 4480.856 kb on + strandat 4480.857 kb on - strandat 4480.863 kb on + strandat 4480.906 kb on - strandat 4480.906 kb on - strandat 4480.906 kb on - strandat 4480.906 kb on - strandat 4480.908 kb on - strandat 4480.908 kb on - strandat 4480.908 kb on - strandat 4480.908 kb on - strandat 4480.908 kb on - strandat 4481.028 kb on + strandat 4481.028 kb on + strandat 4481.035 kb on + strandat 4481.041 kb on + strandat 4481.042 kb on - strandat 4481.072 kb on + strandat 4481.072 kb on + strandat 4481.073 kb on - strandat 4481.080 kb on + strandat 4481.080 kb on + strandat 4481.080 kb on + strandat 4481.080 kb on + strandat 4481.108 kb on + strandat 4481.128 kb on + strandat 4481.129 kb on - strandat 4481.129 kb on - strandat 4481.129 kb on - strandat 4481.129 kb on - strandat 4481.231 kb on + strand, within IAI46_21160at 4481.231 kb on + strand, within IAI46_21160at 4481.231 kb on + strand, within IAI46_21160at 4481.232 kb on - strand, within IAI46_21160at 4481.232 kb on - strand, within IAI46_21160at 4481.256 kb on + strand, within IAI46_21160at 4481.257 kb on - strand, within IAI46_21160at 4481.285 kb on + strand, within IAI46_21160at 4481.285 kb on + strand, within IAI46_21160at 4481.286 kb on - strand, within IAI46_21160at 4481.286 kb on - strand, within IAI46_21160at 4481.286 kb on - strand, within IAI46_21160at 4481.513 kb on + strand, within IAI46_21165at 4481.513 kb on + strand, within IAI46_21165at 4481.514 kb on - strand, within IAI46_21165at 4481.514 kb on - strand, within IAI46_21165at 4481.514 kb on - strand, within IAI46_21165at 4481.514 kb on - strand, within IAI46_21165at 4481.514 kb on - strand, within IAI46_21165at 4481.668 kb on + strand, within IAI46_21165at 4481.668 kb on + strand, within IAI46_21165at 4481.686 kb on + strand, within IAI46_21165at 4481.687 kb on - strand, within IAI46_21165at 4481.689 kb on + strand, within IAI46_21165at 4481.690 kb on - strand, within IAI46_21165at 4481.690 kb on - strand, within IAI46_21165at 4481.690 kb on - strand, within IAI46_21165at 4481.690 kb on - strand, within IAI46_21165at 4481.729 kb on - strandat 4481.729 kb on - strandat 4481.731 kb on + strandat 4481.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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4,480,467 - +0.3
4,480,467 - +0.1
4,480,575 - -0.1
4,480,575 - -0.2
4,480,597 - +0.2
4,480,612 - IAI46_21155 0.11 +0.8
4,480,679 + IAI46_21155 0.55 +0.9
4,480,679 + IAI46_21155 0.55 +0.3
4,480,694 + IAI46_21155 0.65 -0.9
4,480,697 + IAI46_21155 0.67 -0.2
4,480,697 + IAI46_21155 0.67 +1.0
4,480,697 + IAI46_21155 0.67 -0.4
4,480,698 - IAI46_21155 0.67 -0.1
4,480,711 + IAI46_21155 0.76 +0.1
4,480,724 + IAI46_21155 0.84 +0.1
4,480,786 + +0.1
4,480,791 + +0.2
4,480,791 + +0.1
4,480,791 + -0.1
4,480,792 - -0.5
4,480,829 + -0.1
4,480,829 + +0.6
4,480,829 + -0.0
4,480,829 + -0.2
4,480,830 - +0.3
4,480,830 - +0.2
4,480,830 - -0.3
4,480,830 - -0.6
4,480,830 - -0.2
4,480,832 - -0.4
4,480,832 - -0.1
4,480,856 + +0.4
4,480,857 - -0.3
4,480,863 + +0.1
4,480,906 - -0.9
4,480,906 - -0.1
4,480,906 - -0.9
4,480,906 - -0.7
4,480,908 - +0.1
4,480,908 - +1.0
4,480,908 - -0.3
4,480,908 - -1.0
4,480,908 - +0.3
4,481,028 + -1.0
4,481,028 + +1.2
4,481,035 + -0.3
4,481,041 + -1.7
4,481,042 - +0.4
4,481,072 + -0.3
4,481,072 + +1.0
4,481,073 - -0.1
4,481,080 + +0.8
4,481,080 + +0.3
4,481,080 + -0.2
4,481,080 + +0.7
4,481,108 + +0.2
4,481,128 + -0.2
4,481,129 - -0.8
4,481,129 - +0.1
4,481,129 - +1.0
4,481,129 - -0.6
4,481,231 + IAI46_21160 0.36 +0.5
4,481,231 + IAI46_21160 0.36 -0.3
4,481,231 + IAI46_21160 0.36 -0.6
4,481,232 - IAI46_21160 0.37 +0.2
4,481,232 - IAI46_21160 0.37 -0.2
4,481,256 + IAI46_21160 0.45 +0.6
4,481,257 - IAI46_21160 0.46 +0.5
4,481,285 + IAI46_21160 0.55 -1.3
4,481,285 + IAI46_21160 0.55 +0.1
4,481,286 - IAI46_21160 0.56 +0.0
4,481,286 - IAI46_21160 0.56 +0.6
4,481,286 - IAI46_21160 0.56 +0.8
4,481,513 + IAI46_21165 0.30 +1.3
4,481,513 + IAI46_21165 0.30 +0.5
4,481,514 - IAI46_21165 0.30 -0.1
4,481,514 - IAI46_21165 0.30 -0.2
4,481,514 - IAI46_21165 0.30 +0.4
4,481,514 - IAI46_21165 0.30 +0.1
4,481,514 - IAI46_21165 0.30 +0.3
4,481,668 + IAI46_21165 0.77 +0.4
4,481,668 + IAI46_21165 0.77 +0.8
4,481,686 + IAI46_21165 0.82 +0.5
4,481,687 - IAI46_21165 0.82 +1.4
4,481,689 + IAI46_21165 0.83 -0.1
4,481,690 - IAI46_21165 0.83 -1.6
4,481,690 - IAI46_21165 0.83 -0.9
4,481,690 - IAI46_21165 0.83 -0.1
4,481,690 - IAI46_21165 0.83 +1.1
4,481,729 - -0.4
4,481,729 - +0.3
4,481,731 + -1.0
4,481,731 + +0.3

Or see this region's nucleotide sequence