Strain Fitness in Serratia liquefaciens MT49 around IAI46_19550

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19540 and IAI46_19545 are separated by 8 nucleotidesIAI46_19545 and IAI46_19550 overlap by 4 nucleotidesIAI46_19550 and IAI46_19555 are separated by 182 nucleotides IAI46_19540: IAI46_19540 - DNA repair protein RecO, at 4,130,151 to 4,130,882 _19540 IAI46_19545: IAI46_19545 - GTPase Era, at 4,130,891 to 4,131,799 _19545 IAI46_19550: IAI46_19550 - ribonuclease III, at 4,131,796 to 4,132,476 _19550 IAI46_19555: IAI46_19555 - signal peptidase I, at 4,132,659 to 4,133,636 _19555 Position (kb) 4131 4132 4133Strain fitness (log2 ratio) -1 0 1at 4130.813 kb on + strandat 4130.839 kb on + strandat 4130.839 kb on + strandat 4130.839 kb on + strandat 4130.840 kb on - strandat 4130.840 kb on - strandat 4130.893 kb on - strandat 4130.893 kb on - strandat 4130.893 kb on - strandat 4132.488 kb on - strandat 4132.494 kb on - strandat 4132.519 kb on - strandat 4132.635 kb on - strandat 4132.648 kb on + strandat 4132.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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4,130,813 + -1.5
4,130,839 + -0.0
4,130,839 + -0.2
4,130,839 + +1.1
4,130,840 - +0.3
4,130,840 - -0.8
4,130,893 - -0.3
4,130,893 - +0.4
4,130,893 - -0.5
4,132,488 - +0.4
4,132,494 - +1.2
4,132,519 - +0.2
4,132,635 - -0.9
4,132,648 + +1.2
4,132,648 + -1.0

Or see this region's nucleotide sequence