Strain Fitness in Serratia liquefaciens MT49 around IAI46_19455

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19450 and IAI46_19455 are separated by 10 nucleotidesIAI46_19455 and IAI46_19460 are separated by 128 nucleotides IAI46_19450: IAI46_19450 - nitrogen regulatory protein P-II, at 4,107,558 to 4,107,896 _19450 IAI46_19455: IAI46_19455 - NAD+ synthase, at 4,107,907 to 4,109,529 _19455 IAI46_19460: IAI46_19460 - two-component system response regulator GlrR, at 4,109,658 to 4,110,995 _19460 Position (kb) 4107 4108 4109 4110Strain fitness (log2 ratio) -2 -1 0 1 2at 4106.945 kb on + strandat 4106.945 kb on + strandat 4106.945 kb on + strandat 4106.946 kb on - strandat 4106.946 kb on - strandat 4106.946 kb on - strandat 4106.953 kb on + strandat 4106.954 kb on - strandat 4106.954 kb on - strandat 4106.954 kb on - strandat 4107.018 kb on - strandat 4107.054 kb on + strandat 4107.072 kb on + strandat 4107.072 kb on + strandat 4107.102 kb on - strandat 4107.109 kb on + strandat 4107.110 kb on - strandat 4107.110 kb on - strandat 4107.110 kb on - strandat 4107.135 kb on + strandat 4107.136 kb on - strandat 4107.350 kb on + strandat 4107.350 kb on + strandat 4107.359 kb on + strandat 4107.359 kb on + strandat 4107.408 kb on - strandat 4107.559 kb on + strandat 4107.560 kb on - strandat 4107.560 kb on - strandat 4107.594 kb on - strand, within IAI46_19450at 4107.594 kb on - strand, within IAI46_19450at 4107.745 kb on + strand, within IAI46_19450at 4107.745 kb on + strand, within IAI46_19450at 4107.746 kb on - strand, within IAI46_19450at 4107.761 kb on - strand, within IAI46_19450at 4107.875 kb on + strandat 4107.879 kb on - strandat 4109.547 kb on - strandat 4109.547 kb on - strandat 4109.550 kb on - strandat 4109.550 kb on - strandat 4109.602 kb on - strandat 4109.757 kb on - strandat 4109.788 kb on + strandat 4109.788 kb on + strandat 4109.788 kb on + strandat 4109.788 kb on + strandat 4109.807 kb on + strand, within IAI46_19460at 4109.807 kb on + strand, within IAI46_19460at 4109.808 kb on - strand, within IAI46_19460at 4109.880 kb on - strand, within IAI46_19460at 4110.054 kb on - strand, within IAI46_19460at 4110.112 kb on + strand, within IAI46_19460at 4110.113 kb on - strand, within IAI46_19460at 4110.176 kb on + strand, within IAI46_19460at 4110.183 kb on + strand, within IAI46_19460at 4110.183 kb on + strand, within IAI46_19460at 4110.184 kb on - strand, within IAI46_19460at 4110.184 kb on - strand, within IAI46_19460at 4110.275 kb on + strand, within IAI46_19460at 4110.420 kb on - strand, within IAI46_19460at 4110.420 kb on - strand, within IAI46_19460at 4110.497 kb on + strand, within IAI46_19460

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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4,106,945 + +0.2
4,106,945 + -0.9
4,106,945 + -0.7
4,106,946 - -0.2
4,106,946 - +0.3
4,106,946 - -0.1
4,106,953 + -0.4
4,106,954 - -0.4
4,106,954 - +1.0
4,106,954 - +0.8
4,107,018 - +0.6
4,107,054 + +0.1
4,107,072 + +0.2
4,107,072 + -0.9
4,107,102 - +0.1
4,107,109 + -0.5
4,107,110 - +0.6
4,107,110 - -0.9
4,107,110 - +0.4
4,107,135 + +0.9
4,107,136 - -0.0
4,107,350 + -1.0
4,107,350 + +0.6
4,107,359 + +0.3
4,107,359 + -0.0
4,107,408 - -0.2
4,107,559 + +0.1
4,107,560 - +0.9
4,107,560 - +0.2
4,107,594 - IAI46_19450 0.11 -0.0
4,107,594 - IAI46_19450 0.11 +0.8
4,107,745 + IAI46_19450 0.55 -0.2
4,107,745 + IAI46_19450 0.55 -0.3
4,107,746 - IAI46_19450 0.55 +1.1
4,107,761 - IAI46_19450 0.60 -0.0
4,107,875 + +0.4
4,107,879 - -1.0
4,109,547 - +0.5
4,109,547 - +0.7
4,109,550 - +0.1
4,109,550 - +2.3
4,109,602 - +2.0
4,109,757 - -0.0
4,109,788 + -0.7
4,109,788 + +0.6
4,109,788 + -0.6
4,109,788 + -0.4
4,109,807 + IAI46_19460 0.11 +1.1
4,109,807 + IAI46_19460 0.11 -0.3
4,109,808 - IAI46_19460 0.11 -0.4
4,109,880 - IAI46_19460 0.17 -0.4
4,110,054 - IAI46_19460 0.30 +0.5
4,110,112 + IAI46_19460 0.34 -0.6
4,110,113 - IAI46_19460 0.34 -0.6
4,110,176 + IAI46_19460 0.39 -0.8
4,110,183 + IAI46_19460 0.39 -0.6
4,110,183 + IAI46_19460 0.39 -0.6
4,110,184 - IAI46_19460 0.39 +1.0
4,110,184 - IAI46_19460 0.39 +1.4
4,110,275 + IAI46_19460 0.46 +1.2
4,110,420 - IAI46_19460 0.57 -2.2
4,110,420 - IAI46_19460 0.57 -1.2
4,110,497 + IAI46_19460 0.63 +0.2

Or see this region's nucleotide sequence