Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18740 and IAI46_18745 overlap by 4 nucleotides IAI46_18745 and IAI46_18750 are separated by 2 nucleotides IAI46_18750 and IAI46_18755 are separated by 28 nucleotides IAI46_18755 and IAI46_18760 are separated by 117 nucleotides
IAI46_18740: IAI46_18740 - succinyl-diaminopimelate desuccinylase, at 3,947,091 to 3,948,218
_18740
IAI46_18745: IAI46_18745 - M15 family metallopeptidase, at 3,948,215 to 3,948,889
_18745
IAI46_18750: IAI46_18750 - YpfN family protein, at 3,948,892 to 3,949,077
_18750
IAI46_18755: IAI46_18755 - esterase, at 3,949,106 to 3,949,795
_18755
IAI46_18760: IAI46_18760 - tRNA(Met) cytidine acetyltransferase, at 3,949,913 to 3,951,925
_18760
Position (kb)
3948
3949
3950 Strain fitness (log2 ratio)
-1
0
1
2 at 3948.430 kb on - strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.432 kb on + strand, within IAI46_18745 at 3948.433 kb on - strand, within IAI46_18745 at 3948.436 kb on + strand, within IAI46_18745 at 3948.436 kb on + strand, within IAI46_18745 at 3948.437 kb on - strand, within IAI46_18745 at 3948.558 kb on - strand, within IAI46_18745 at 3948.558 kb on - strand, within IAI46_18745 at 3948.558 kb on - strand, within IAI46_18745 at 3948.626 kb on + strand, within IAI46_18745 at 3948.805 kb on + strand, within IAI46_18745 at 3948.865 kb on + strand at 3948.866 kb on - strand at 3948.866 kb on - strand at 3948.868 kb on - strand at 3948.938 kb on + strand, within IAI46_18750 at 3948.991 kb on + strand, within IAI46_18750 at 3949.091 kb on + strand at 3949.092 kb on - strand at 3949.107 kb on + strand at 3949.108 kb on - strand at 3949.145 kb on - strand at 3949.173 kb on + strand at 3949.176 kb on + strand, within IAI46_18755 at 3949.177 kb on - strand, within IAI46_18755 at 3949.420 kb on + strand, within IAI46_18755 at 3949.421 kb on - strand, within IAI46_18755 at 3949.454 kb on - strand, within IAI46_18755 at 3949.815 kb on + strand at 3949.815 kb on + strand at 3949.816 kb on - strand at 3949.816 kb on - strand at 3949.856 kb on + strand at 3949.856 kb on + strand at 3949.857 kb on - strand at 3949.860 kb on - strand at 3949.860 kb on - strand at 3949.861 kb on + strand at 3949.862 kb on - strand at 3950.033 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 3,948,430 - IAI46_18745 0.32 +0.2 3,948,432 + IAI46_18745 0.32 -0.4 3,948,432 + IAI46_18745 0.32 +0.4 3,948,432 + IAI46_18745 0.32 -0.1 3,948,432 + IAI46_18745 0.32 -1.0 3,948,432 + IAI46_18745 0.32 +0.2 3,948,432 + IAI46_18745 0.32 -1.2 3,948,432 + IAI46_18745 0.32 +1.8 3,948,432 + IAI46_18745 0.32 -0.2 3,948,432 + IAI46_18745 0.32 +0.5 3,948,433 - IAI46_18745 0.32 -0.5 3,948,436 + IAI46_18745 0.33 -0.5 3,948,436 + IAI46_18745 0.33 -0.4 3,948,437 - IAI46_18745 0.33 +0.0 3,948,558 - IAI46_18745 0.51 -0.2 3,948,558 - IAI46_18745 0.51 -1.2 3,948,558 - IAI46_18745 0.51 -0.5 3,948,626 + IAI46_18745 0.61 +0.2 3,948,805 + IAI46_18745 0.87 +0.1 3,948,865 + -0.2 3,948,866 - -0.5 3,948,866 - -0.8 3,948,868 - +0.9 3,948,938 + IAI46_18750 0.25 -0.7 3,948,991 + IAI46_18750 0.53 +0.2 3,949,091 + +0.5 3,949,092 - -0.2 3,949,107 + -0.3 3,949,108 - +1.1 3,949,145 - +0.5 3,949,173 + +0.9 3,949,176 + IAI46_18755 0.10 +0.7 3,949,177 - IAI46_18755 0.10 -0.5 3,949,420 + IAI46_18755 0.46 -0.6 3,949,421 - IAI46_18755 0.46 -0.2 3,949,454 - IAI46_18755 0.50 +0.2 3,949,815 + +1.2 3,949,815 + +0.8 3,949,816 - +0.2 3,949,816 - +0.4 3,949,856 + +0.1 3,949,856 + -0.1 3,949,857 - -0.7 3,949,860 - -1.3 3,949,860 - -1.0 3,949,861 + -0.6 3,949,862 - +0.8 3,950,033 + +0.4
Or see this region's nucleotide sequence