Strain Fitness in Serratia liquefaciens MT49 around IAI46_18750

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18740 and IAI46_18745 overlap by 4 nucleotidesIAI46_18745 and IAI46_18750 are separated by 2 nucleotidesIAI46_18750 and IAI46_18755 are separated by 28 nucleotidesIAI46_18755 and IAI46_18760 are separated by 117 nucleotides IAI46_18740: IAI46_18740 - succinyl-diaminopimelate desuccinylase, at 3,947,091 to 3,948,218 _18740 IAI46_18745: IAI46_18745 - M15 family metallopeptidase, at 3,948,215 to 3,948,889 _18745 IAI46_18750: IAI46_18750 - YpfN family protein, at 3,948,892 to 3,949,077 _18750 IAI46_18755: IAI46_18755 - esterase, at 3,949,106 to 3,949,795 _18755 IAI46_18760: IAI46_18760 - tRNA(Met) cytidine acetyltransferase, at 3,949,913 to 3,951,925 _18760 Position (kb) 3948 3949 3950Strain fitness (log2 ratio) -1 0 1 2at 3948.430 kb on - strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.432 kb on + strand, within IAI46_18745at 3948.433 kb on - strand, within IAI46_18745at 3948.436 kb on + strand, within IAI46_18745at 3948.436 kb on + strand, within IAI46_18745at 3948.437 kb on - strand, within IAI46_18745at 3948.558 kb on - strand, within IAI46_18745at 3948.558 kb on - strand, within IAI46_18745at 3948.558 kb on - strand, within IAI46_18745at 3948.626 kb on + strand, within IAI46_18745at 3948.805 kb on + strand, within IAI46_18745at 3948.865 kb on + strandat 3948.866 kb on - strandat 3948.866 kb on - strandat 3948.868 kb on - strandat 3948.938 kb on + strand, within IAI46_18750at 3948.991 kb on + strand, within IAI46_18750at 3949.091 kb on + strandat 3949.092 kb on - strandat 3949.107 kb on + strandat 3949.108 kb on - strandat 3949.145 kb on - strandat 3949.173 kb on + strandat 3949.176 kb on + strand, within IAI46_18755at 3949.177 kb on - strand, within IAI46_18755at 3949.420 kb on + strand, within IAI46_18755at 3949.421 kb on - strand, within IAI46_18755at 3949.454 kb on - strand, within IAI46_18755at 3949.815 kb on + strandat 3949.815 kb on + strandat 3949.816 kb on - strandat 3949.816 kb on - strandat 3949.856 kb on + strandat 3949.856 kb on + strandat 3949.857 kb on - strandat 3949.860 kb on - strandat 3949.860 kb on - strandat 3949.861 kb on + strandat 3949.862 kb on - strandat 3950.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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3,948,430 - IAI46_18745 0.32 +0.2
3,948,432 + IAI46_18745 0.32 -0.4
3,948,432 + IAI46_18745 0.32 +0.4
3,948,432 + IAI46_18745 0.32 -0.1
3,948,432 + IAI46_18745 0.32 -1.0
3,948,432 + IAI46_18745 0.32 +0.2
3,948,432 + IAI46_18745 0.32 -1.2
3,948,432 + IAI46_18745 0.32 +1.8
3,948,432 + IAI46_18745 0.32 -0.2
3,948,432 + IAI46_18745 0.32 +0.5
3,948,433 - IAI46_18745 0.32 -0.5
3,948,436 + IAI46_18745 0.33 -0.5
3,948,436 + IAI46_18745 0.33 -0.4
3,948,437 - IAI46_18745 0.33 +0.0
3,948,558 - IAI46_18745 0.51 -0.2
3,948,558 - IAI46_18745 0.51 -1.2
3,948,558 - IAI46_18745 0.51 -0.5
3,948,626 + IAI46_18745 0.61 +0.2
3,948,805 + IAI46_18745 0.87 +0.1
3,948,865 + -0.2
3,948,866 - -0.5
3,948,866 - -0.8
3,948,868 - +0.9
3,948,938 + IAI46_18750 0.25 -0.7
3,948,991 + IAI46_18750 0.53 +0.2
3,949,091 + +0.5
3,949,092 - -0.2
3,949,107 + -0.3
3,949,108 - +1.1
3,949,145 - +0.5
3,949,173 + +0.9
3,949,176 + IAI46_18755 0.10 +0.7
3,949,177 - IAI46_18755 0.10 -0.5
3,949,420 + IAI46_18755 0.46 -0.6
3,949,421 - IAI46_18755 0.46 -0.2
3,949,454 - IAI46_18755 0.50 +0.2
3,949,815 + +1.2
3,949,815 + +0.8
3,949,816 - +0.2
3,949,816 - +0.4
3,949,856 + +0.1
3,949,856 + -0.1
3,949,857 - -0.7
3,949,860 - -1.3
3,949,860 - -1.0
3,949,861 + -0.6
3,949,862 - +0.8
3,950,033 + +0.4

Or see this region's nucleotide sequence