Strain Fitness in Serratia liquefaciens MT49 around IAI46_17755

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17750 and IAI46_17755 are separated by 74 nucleotidesIAI46_17755 and IAI46_17760 are separated by 66 nucleotidesIAI46_17760 and IAI46_17765 are separated by 90 nucleotides IAI46_17750: IAI46_17750 - acetate kinase, at 3,741,852 to 3,743,054 _17750 IAI46_17755: IAI46_17755 - phosphate acetyltransferase, at 3,743,129 to 3,745,291 _17755 IAI46_17760: IAI46_17760 - NUDIX hydrolase YfcD, at 3,745,358 to 3,745,915 _17760 IAI46_17765: IAI46_17765 - phosphodiesterase, at 3,746,006 to 3,746,557 _17765 Position (kb) 3743 3744 3745 3746Strain fitness (log2 ratio) -3 -2 -1 0 1at 3742.163 kb on - strand, within IAI46_17750at 3742.335 kb on + strand, within IAI46_17750at 3742.341 kb on + strand, within IAI46_17750at 3742.354 kb on - strand, within IAI46_17750at 3742.539 kb on - strand, within IAI46_17750at 3742.728 kb on + strand, within IAI46_17750at 3742.729 kb on - strand, within IAI46_17750at 3742.757 kb on + strand, within IAI46_17750at 3742.766 kb on - strand, within IAI46_17750at 3742.790 kb on + strand, within IAI46_17750at 3743.095 kb on + strandat 3743.106 kb on + strandat 3743.123 kb on + strandat 3743.124 kb on - strandat 3743.143 kb on + strandat 3743.144 kb on - strandat 3743.349 kb on - strand, within IAI46_17755at 3743.898 kb on + strand, within IAI46_17755at 3744.308 kb on + strand, within IAI46_17755at 3744.308 kb on + strand, within IAI46_17755at 3744.531 kb on - strand, within IAI46_17755at 3744.531 kb on - strand, within IAI46_17755at 3744.557 kb on - strand, within IAI46_17755at 3744.780 kb on + strand, within IAI46_17755at 3744.782 kb on + strand, within IAI46_17755at 3744.899 kb on + strand, within IAI46_17755at 3745.118 kb on + strandat 3745.229 kb on + strandat 3745.229 kb on + strandat 3745.230 kb on - strandat 3745.230 kb on - strandat 3745.231 kb on + strandat 3745.293 kb on - strandat 3745.304 kb on + strandat 3745.305 kb on - strandat 3745.396 kb on - strandat 3745.396 kb on - strandat 3745.789 kb on + strand, within IAI46_17760at 3745.791 kb on + strand, within IAI46_17760at 3745.791 kb on + strand, within IAI46_17760at 3745.791 kb on + strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.792 kb on - strand, within IAI46_17760at 3745.795 kb on + strand, within IAI46_17760at 3745.795 kb on + strand, within IAI46_17760at 3745.796 kb on - strand, within IAI46_17760at 3745.796 kb on - strand, within IAI46_17760at 3745.888 kb on + strandat 3745.931 kb on - strandat 3746.000 kb on + strandat 3746.001 kb on - strandat 3746.001 kb on - strandat 3746.003 kb on - strandat 3746.016 kb on - strandat 3746.064 kb on - strand, within IAI46_17765at 3746.064 kb on - strand, within IAI46_17765at 3746.082 kb on - strand, within IAI46_17765at 3746.172 kb on - strand, within IAI46_17765at 3746.188 kb on - strand, within IAI46_17765at 3746.236 kb on - strand, within IAI46_17765at 3746.276 kb on + strand, within IAI46_17765at 3746.276 kb on + strand, within IAI46_17765

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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3,742,163 - IAI46_17750 0.26 -0.6
3,742,335 + IAI46_17750 0.40 +0.1
3,742,341 + IAI46_17750 0.41 -0.6
3,742,354 - IAI46_17750 0.42 +0.6
3,742,539 - IAI46_17750 0.57 +1.5
3,742,728 + IAI46_17750 0.73 -1.3
3,742,729 - IAI46_17750 0.73 +0.4
3,742,757 + IAI46_17750 0.75 -1.6
3,742,766 - IAI46_17750 0.76 -0.6
3,742,790 + IAI46_17750 0.78 +0.4
3,743,095 + +0.3
3,743,106 + +0.6
3,743,123 + -1.6
3,743,124 - -0.3
3,743,143 + -0.6
3,743,144 - -0.8
3,743,349 - IAI46_17755 0.10 -0.0
3,743,898 + IAI46_17755 0.36 -0.8
3,744,308 + IAI46_17755 0.55 -0.5
3,744,308 + IAI46_17755 0.55 -0.0
3,744,531 - IAI46_17755 0.65 +0.8
3,744,531 - IAI46_17755 0.65 +0.4
3,744,557 - IAI46_17755 0.66 -0.9
3,744,780 + IAI46_17755 0.76 -1.0
3,744,782 + IAI46_17755 0.76 -0.3
3,744,899 + IAI46_17755 0.82 -1.3
3,745,118 + -1.5
3,745,229 + -0.7
3,745,229 + -2.8
3,745,230 - -1.6
3,745,230 - +0.1
3,745,231 + +1.0
3,745,293 - -0.4
3,745,304 + -0.4
3,745,305 - +0.6
3,745,396 - -0.6
3,745,396 - -1.1
3,745,789 + IAI46_17760 0.77 -0.0
3,745,791 + IAI46_17760 0.78 +0.5
3,745,791 + IAI46_17760 0.78 -1.5
3,745,791 + IAI46_17760 0.78 +0.5
3,745,792 - IAI46_17760 0.78 -0.7
3,745,792 - IAI46_17760 0.78 -0.3
3,745,792 - IAI46_17760 0.78 -0.1
3,745,792 - IAI46_17760 0.78 +1.7
3,745,792 - IAI46_17760 0.78 +0.4
3,745,792 - IAI46_17760 0.78 +0.2
3,745,795 + IAI46_17760 0.78 +0.5
3,745,795 + IAI46_17760 0.78 -0.5
3,745,796 - IAI46_17760 0.78 +0.1
3,745,796 - IAI46_17760 0.78 +0.3
3,745,888 + -0.3
3,745,931 - -1.2
3,746,000 + -0.6
3,746,001 - -0.4
3,746,001 - -0.2
3,746,003 - +0.8
3,746,016 - -0.8
3,746,064 - IAI46_17765 0.11 +1.0
3,746,064 - IAI46_17765 0.11 +0.4
3,746,082 - IAI46_17765 0.14 -0.6
3,746,172 - IAI46_17765 0.30 +1.6
3,746,188 - IAI46_17765 0.33 +1.4
3,746,236 - IAI46_17765 0.42 +0.3
3,746,276 + IAI46_17765 0.49 -1.3
3,746,276 + IAI46_17765 0.49 +0.4

Or see this region's nucleotide sequence