Strain Fitness in Serratia liquefaciens MT49 around IAI46_15610

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15605 and IAI46_15610 are separated by 11 nucleotidesIAI46_15610 and IAI46_15615 overlap by 4 nucleotides IAI46_15605: IAI46_15605 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,272,988 to 3,274,772 _15605 IAI46_15610: IAI46_15610 - two-component system response regulator NarL, at 3,274,784 to 3,275,434 _15610 IAI46_15615: IAI46_15615 - YchO/YchP family invasin, at 3,275,431 to 3,276,936 _15615 Position (kb) 3274 3275 3276Strain fitness (log2 ratio) -2 -1 0 1 2at 3274.070 kb on + strand, within IAI46_15605at 3274.071 kb on - strand, within IAI46_15605at 3274.071 kb on - strand, within IAI46_15605at 3274.310 kb on + strand, within IAI46_15605at 3274.310 kb on + strand, within IAI46_15605at 3274.310 kb on + strand, within IAI46_15605at 3274.310 kb on + strand, within IAI46_15605at 3274.628 kb on + strandat 3274.628 kb on + strandat 3274.771 kb on - strandat 3274.812 kb on + strandat 3274.849 kb on - strand, within IAI46_15610at 3274.967 kb on - strand, within IAI46_15610at 3275.080 kb on - strand, within IAI46_15610at 3275.106 kb on + strand, within IAI46_15610at 3275.107 kb on - strand, within IAI46_15610at 3275.412 kb on + strandat 3275.877 kb on + strand, within IAI46_15615at 3275.921 kb on + strand, within IAI46_15615at 3275.921 kb on + strand, within IAI46_15615at 3275.922 kb on - strand, within IAI46_15615at 3275.932 kb on + strand, within IAI46_15615at 3276.053 kb on + strand, within IAI46_15615at 3276.053 kb on + strand, within IAI46_15615at 3276.054 kb on - strand, within IAI46_15615at 3276.132 kb on - strand, within IAI46_15615at 3276.266 kb on + strand, within IAI46_15615at 3276.272 kb on + strand, within IAI46_15615at 3276.272 kb on + strand, within IAI46_15615at 3276.272 kb on + strand, within IAI46_15615at 3276.273 kb on - strand, within IAI46_15615at 3276.273 kb on - strand, within IAI46_15615at 3276.273 kb on - strand, within IAI46_15615at 3276.366 kb on + strand, within IAI46_15615at 3276.367 kb on - strand, within IAI46_15615

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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3,274,070 + IAI46_15605 0.61 +0.4
3,274,071 - IAI46_15605 0.61 +1.0
3,274,071 - IAI46_15605 0.61 +1.4
3,274,310 + IAI46_15605 0.74 -2.1
3,274,310 + IAI46_15605 0.74 +0.0
3,274,310 + IAI46_15605 0.74 -0.6
3,274,310 + IAI46_15605 0.74 -0.6
3,274,628 + +0.4
3,274,628 + -0.0
3,274,771 - +0.8
3,274,812 + -1.8
3,274,849 - IAI46_15610 0.10 -1.9
3,274,967 - IAI46_15610 0.28 -0.6
3,275,080 - IAI46_15610 0.45 -0.5
3,275,106 + IAI46_15610 0.49 +0.4
3,275,107 - IAI46_15610 0.50 -0.1
3,275,412 + -0.1
3,275,877 + IAI46_15615 0.30 -0.5
3,275,921 + IAI46_15615 0.33 -0.8
3,275,921 + IAI46_15615 0.33 -0.8
3,275,922 - IAI46_15615 0.33 +0.8
3,275,932 + IAI46_15615 0.33 -1.5
3,276,053 + IAI46_15615 0.41 -0.8
3,276,053 + IAI46_15615 0.41 +2.1
3,276,054 - IAI46_15615 0.41 -0.3
3,276,132 - IAI46_15615 0.47 +1.0
3,276,266 + IAI46_15615 0.55 -2.2
3,276,272 + IAI46_15615 0.56 +0.0
3,276,272 + IAI46_15615 0.56 -0.4
3,276,272 + IAI46_15615 0.56 -0.8
3,276,273 - IAI46_15615 0.56 +0.4
3,276,273 - IAI46_15615 0.56 +0.7
3,276,273 - IAI46_15615 0.56 -0.1
3,276,366 + IAI46_15615 0.62 -0.1
3,276,367 - IAI46_15615 0.62 +0.2

Or see this region's nucleotide sequence