Strain Fitness in Serratia liquefaciens MT49 around IAI46_14955

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14950 and IAI46_14955 are separated by 45 nucleotidesIAI46_14955 and IAI46_14960 are separated by 13 nucleotidesIAI46_14960 and IAI46_14965 overlap by 1 nucleotides IAI46_14950: IAI46_14950 - SGNH/GDSL hydrolase family protein, at 3,156,885 to 3,158,717 _14950 IAI46_14955: IAI46_14955 - hypothetical protein, at 3,158,763 to 3,159,773 _14955 IAI46_14960: IAI46_14960 - DUF2612 domain-containing protein, at 3,159,787 to 3,160,374 _14960 IAI46_14965: IAI46_14965 - baseplate J/gp47 family protein, at 3,160,374 to 3,161,612 _14965 Position (kb) 3158 3159 3160Strain fitness (log2 ratio) -2 -1 0 1 2at 3157.781 kb on - strand, within IAI46_14950at 3157.782 kb on + strand, within IAI46_14950at 3157.827 kb on - strand, within IAI46_14950at 3157.932 kb on + strand, within IAI46_14950at 3157.933 kb on - strand, within IAI46_14950at 3157.933 kb on - strand, within IAI46_14950at 3158.043 kb on + strand, within IAI46_14950at 3158.044 kb on - strand, within IAI46_14950at 3158.044 kb on - strand, within IAI46_14950at 3158.131 kb on - strand, within IAI46_14950at 3158.219 kb on - strand, within IAI46_14950at 3158.238 kb on - strand, within IAI46_14950at 3158.247 kb on + strand, within IAI46_14950at 3158.247 kb on + strand, within IAI46_14950at 3158.360 kb on + strand, within IAI46_14950at 3158.371 kb on - strand, within IAI46_14950at 3158.422 kb on - strand, within IAI46_14950at 3158.433 kb on + strand, within IAI46_14950at 3158.447 kb on + strand, within IAI46_14950at 3158.447 kb on + strand, within IAI46_14950at 3158.447 kb on + strand, within IAI46_14950at 3158.455 kb on + strand, within IAI46_14950at 3158.455 kb on + strand, within IAI46_14950at 3158.518 kb on - strand, within IAI46_14950at 3158.633 kb on + strandat 3158.699 kb on + strandat 3158.699 kb on + strandat 3158.708 kb on + strandat 3158.709 kb on - strandat 3158.810 kb on + strandat 3158.814 kb on + strandat 3158.814 kb on + strandat 3158.838 kb on - strandat 3158.852 kb on + strandat 3158.895 kb on + strand, within IAI46_14955at 3158.896 kb on - strand, within IAI46_14955at 3158.898 kb on + strand, within IAI46_14955at 3158.898 kb on + strand, within IAI46_14955at 3158.898 kb on + strand, within IAI46_14955at 3158.964 kb on - strand, within IAI46_14955at 3158.977 kb on + strand, within IAI46_14955at 3158.978 kb on - strand, within IAI46_14955at 3158.978 kb on - strand, within IAI46_14955at 3159.047 kb on + strand, within IAI46_14955at 3159.080 kb on + strand, within IAI46_14955at 3159.081 kb on - strand, within IAI46_14955at 3159.138 kb on - strand, within IAI46_14955at 3159.175 kb on - strand, within IAI46_14955at 3159.258 kb on + strand, within IAI46_14955at 3159.312 kb on + strand, within IAI46_14955at 3159.312 kb on + strand, within IAI46_14955at 3159.312 kb on + strand, within IAI46_14955at 3159.333 kb on - strand, within IAI46_14955at 3159.568 kb on - strand, within IAI46_14955at 3159.574 kb on + strand, within IAI46_14955at 3159.574 kb on + strand, within IAI46_14955at 3159.574 kb on + strand, within IAI46_14955at 3159.574 kb on + strand, within IAI46_14955at 3159.575 kb on - strand, within IAI46_14955at 3159.599 kb on + strand, within IAI46_14955at 3159.602 kb on - strand, within IAI46_14955at 3159.744 kb on + strandat 3159.765 kb on - strandat 3159.951 kb on + strand, within IAI46_14960at 3159.954 kb on - strand, within IAI46_14960at 3160.155 kb on - strand, within IAI46_14960at 3160.196 kb on - strand, within IAI46_14960at 3160.198 kb on + strand, within IAI46_14960at 3160.199 kb on - strand, within IAI46_14960at 3160.223 kb on + strand, within IAI46_14960at 3160.224 kb on - strand, within IAI46_14960at 3160.224 kb on - strand, within IAI46_14960at 3160.240 kb on + strand, within IAI46_14960at 3160.306 kb on - strand, within IAI46_14960at 3160.356 kb on + strandat 3160.411 kb on - strandat 3160.411 kb on - strandat 3160.419 kb on + strandat 3160.453 kb on + strandat 3160.572 kb on - strand, within IAI46_14965at 3160.628 kb on + strand, within IAI46_14965at 3160.704 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.729 kb on - strand, within IAI46_14965at 3160.729 kb on - strand, within IAI46_14965at 3160.733 kb on - strand, within IAI46_14965at 3160.733 kb on - strand, within IAI46_14965at 3160.733 kb on - strand, within IAI46_14965at 3160.742 kb on + strand, within IAI46_14965

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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3,157,781 - IAI46_14950 0.49 +2.6
3,157,782 + IAI46_14950 0.49 -1.3
3,157,827 - IAI46_14950 0.51 +0.8
3,157,932 + IAI46_14950 0.57 +0.9
3,157,933 - IAI46_14950 0.57 +0.0
3,157,933 - IAI46_14950 0.57 -0.3
3,158,043 + IAI46_14950 0.63 -1.8
3,158,044 - IAI46_14950 0.63 +0.1
3,158,044 - IAI46_14950 0.63 +1.1
3,158,131 - IAI46_14950 0.68 -0.1
3,158,219 - IAI46_14950 0.73 +0.6
3,158,238 - IAI46_14950 0.74 -0.9
3,158,247 + IAI46_14950 0.74 -0.1
3,158,247 + IAI46_14950 0.74 +0.7
3,158,360 + IAI46_14950 0.80 +0.7
3,158,371 - IAI46_14950 0.81 -0.5
3,158,422 - IAI46_14950 0.84 +1.2
3,158,433 + IAI46_14950 0.84 -0.5
3,158,447 + IAI46_14950 0.85 -0.3
3,158,447 + IAI46_14950 0.85 -1.5
3,158,447 + IAI46_14950 0.85 -0.4
3,158,455 + IAI46_14950 0.86 +0.3
3,158,455 + IAI46_14950 0.86 +0.1
3,158,518 - IAI46_14950 0.89 +1.7
3,158,633 + -0.6
3,158,699 + +1.2
3,158,699 + -1.1
3,158,708 + +1.3
3,158,709 - -0.4
3,158,810 + -0.5
3,158,814 + +0.5
3,158,814 + +1.0
3,158,838 - -2.1
3,158,852 + -0.7
3,158,895 + IAI46_14955 0.13 -1.4
3,158,896 - IAI46_14955 0.13 -1.5
3,158,898 + IAI46_14955 0.13 +0.7
3,158,898 + IAI46_14955 0.13 +0.7
3,158,898 + IAI46_14955 0.13 -0.9
3,158,964 - IAI46_14955 0.20 +0.0
3,158,977 + IAI46_14955 0.21 -0.1
3,158,978 - IAI46_14955 0.21 +0.6
3,158,978 - IAI46_14955 0.21 -0.1
3,159,047 + IAI46_14955 0.28 +0.2
3,159,080 + IAI46_14955 0.31 +0.7
3,159,081 - IAI46_14955 0.31 +1.7
3,159,138 - IAI46_14955 0.37 +0.3
3,159,175 - IAI46_14955 0.41 +0.8
3,159,258 + IAI46_14955 0.49 +1.7
3,159,312 + IAI46_14955 0.54 -2.3
3,159,312 + IAI46_14955 0.54 -0.4
3,159,312 + IAI46_14955 0.54 +1.1
3,159,333 - IAI46_14955 0.56 -1.2
3,159,568 - IAI46_14955 0.80 -0.3
3,159,574 + IAI46_14955 0.80 -2.1
3,159,574 + IAI46_14955 0.80 +0.1
3,159,574 + IAI46_14955 0.80 +0.5
3,159,574 + IAI46_14955 0.80 +2.0
3,159,575 - IAI46_14955 0.80 +1.3
3,159,599 + IAI46_14955 0.83 +0.2
3,159,602 - IAI46_14955 0.83 +0.6
3,159,744 + +0.0
3,159,765 - +0.0
3,159,951 + IAI46_14960 0.28 -0.0
3,159,954 - IAI46_14960 0.28 -0.4
3,160,155 - IAI46_14960 0.63 +0.5
3,160,196 - IAI46_14960 0.70 -0.4
3,160,198 + IAI46_14960 0.70 +0.5
3,160,199 - IAI46_14960 0.70 +0.4
3,160,223 + IAI46_14960 0.74 +0.2
3,160,224 - IAI46_14960 0.74 -0.4
3,160,224 - IAI46_14960 0.74 -2.1
3,160,240 + IAI46_14960 0.77 -0.1
3,160,306 - IAI46_14960 0.88 -0.0
3,160,356 + -1.3
3,160,411 - +0.0
3,160,411 - +0.8
3,160,419 + -0.6
3,160,453 + -0.1
3,160,572 - IAI46_14965 0.16 +0.2
3,160,628 + IAI46_14965 0.21 +0.7
3,160,704 + IAI46_14965 0.27 +1.4
3,160,728 + IAI46_14965 0.29 -0.3
3,160,728 + IAI46_14965 0.29 -1.1
3,160,728 + IAI46_14965 0.29 +0.6
3,160,728 + IAI46_14965 0.29 +0.1
3,160,729 - IAI46_14965 0.29 -1.3
3,160,729 - IAI46_14965 0.29 +1.4
3,160,733 - IAI46_14965 0.29 -1.5
3,160,733 - IAI46_14965 0.29 -0.9
3,160,733 - IAI46_14965 0.29 +0.0
3,160,742 + IAI46_14965 0.30 -0.5

Or see this region's nucleotide sequence