Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14830 and IAI46_14835 are separated by 100 nucleotides IAI46_14835 and IAI46_14840 are separated by 142 nucleotides IAI46_14840 and IAI46_14845 are separated by 52 nucleotides
IAI46_14830: IAI46_14830 - manganese efflux pump MntP, at 3,141,750 to 3,142,319
_14830
IAI46_14835: IAI46_14835 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 3,142,420 to 3,143,241
_14835
IAI46_14840: IAI46_14840 - peptidoglycan editing factor PgeF, at 3,143,384 to 3,144,100
_14840
IAI46_14845: IAI46_14845 - transcription antiterminator/RNA stability regulator CspE, at 3,144,153 to 3,144,362
_14845
Position (kb)
3142
3143
3144 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3141.455 kb on - strand at 3141.519 kb on + strand at 3141.544 kb on + strand at 3141.549 kb on + strand at 3141.549 kb on + strand at 3141.549 kb on + strand at 3141.684 kb on + strand at 3141.684 kb on + strand at 3141.718 kb on + strand at 3141.718 kb on + strand at 3141.742 kb on + strand at 3141.743 kb on - strand at 3141.747 kb on + strand at 3141.764 kb on + strand at 3141.896 kb on + strand, within IAI46_14830 at 3141.939 kb on + strand, within IAI46_14830 at 3141.939 kb on + strand, within IAI46_14830 at 3141.940 kb on - strand, within IAI46_14830 at 3141.984 kb on - strand, within IAI46_14830 at 3142.184 kb on + strand, within IAI46_14830 at 3142.184 kb on + strand, within IAI46_14830 at 3142.185 kb on - strand, within IAI46_14830 at 3142.377 kb on + strand at 3142.378 kb on - strand at 3142.422 kb on - strand at 3142.658 kb on + strand, within IAI46_14835 at 3142.680 kb on - strand, within IAI46_14835 at 3142.767 kb on - strand, within IAI46_14835 at 3142.771 kb on - strand, within IAI46_14835 at 3142.906 kb on - strand, within IAI46_14835 at 3142.906 kb on - strand, within IAI46_14835 at 3142.906 kb on - strand, within IAI46_14835 at 3142.946 kb on + strand, within IAI46_14835 at 3143.235 kb on - strand at 3143.272 kb on + strand at 3143.277 kb on + strand at 3143.278 kb on - strand at 3143.355 kb on + strand at 3143.532 kb on + strand, within IAI46_14840 at 3143.533 kb on - strand, within IAI46_14840 at 3143.574 kb on - strand, within IAI46_14840 at 3143.789 kb on + strand, within IAI46_14840 at 3143.850 kb on + strand, within IAI46_14840 at 3143.996 kb on + strand, within IAI46_14840 at 3143.997 kb on - strand, within IAI46_14840 at 3144.072 kb on - strand at 3144.072 kb on - strand at 3144.083 kb on - strand at 3144.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 3,141,455 - -0.3 3,141,519 + -1.2 3,141,544 + +0.3 3,141,549 + -0.8 3,141,549 + +0.4 3,141,549 + -0.8 3,141,684 + +0.6 3,141,684 + -1.1 3,141,718 + -2.1 3,141,718 + -0.1 3,141,742 + -0.4 3,141,743 - +1.7 3,141,747 + +0.1 3,141,764 + -0.6 3,141,896 + IAI46_14830 0.26 +0.8 3,141,939 + IAI46_14830 0.33 -0.0 3,141,939 + IAI46_14830 0.33 -1.5 3,141,940 - IAI46_14830 0.33 +0.7 3,141,984 - IAI46_14830 0.41 -0.4 3,142,184 + IAI46_14830 0.76 -0.3 3,142,184 + IAI46_14830 0.76 +1.1 3,142,185 - IAI46_14830 0.76 -0.9 3,142,377 + +0.7 3,142,378 - +0.7 3,142,422 - -0.6 3,142,658 + IAI46_14835 0.29 -0.2 3,142,680 - IAI46_14835 0.32 -2.9 3,142,767 - IAI46_14835 0.42 -0.2 3,142,771 - IAI46_14835 0.43 -1.2 3,142,906 - IAI46_14835 0.59 +0.1 3,142,906 - IAI46_14835 0.59 -0.9 3,142,906 - IAI46_14835 0.59 -0.3 3,142,946 + IAI46_14835 0.64 -0.0 3,143,235 - -0.4 3,143,272 + +0.5 3,143,277 + +1.4 3,143,278 - +1.4 3,143,355 + +0.4 3,143,532 + IAI46_14840 0.21 +0.7 3,143,533 - IAI46_14840 0.21 +0.5 3,143,574 - IAI46_14840 0.26 +0.6 3,143,789 + IAI46_14840 0.56 -0.1 3,143,850 + IAI46_14840 0.65 -0.1 3,143,996 + IAI46_14840 0.85 +0.4 3,143,997 - IAI46_14840 0.85 -1.5 3,144,072 - -3.0 3,144,072 - +0.4 3,144,083 - -1.0 3,144,154 + -0.3
Or see this region's nucleotide sequence