Strain Fitness in Serratia liquefaciens MT49 around IAI46_14835

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14830 and IAI46_14835 are separated by 100 nucleotidesIAI46_14835 and IAI46_14840 are separated by 142 nucleotidesIAI46_14840 and IAI46_14845 are separated by 52 nucleotides IAI46_14830: IAI46_14830 - manganese efflux pump MntP, at 3,141,750 to 3,142,319 _14830 IAI46_14835: IAI46_14835 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 3,142,420 to 3,143,241 _14835 IAI46_14840: IAI46_14840 - peptidoglycan editing factor PgeF, at 3,143,384 to 3,144,100 _14840 IAI46_14845: IAI46_14845 - transcription antiterminator/RNA stability regulator CspE, at 3,144,153 to 3,144,362 _14845 Position (kb) 3142 3143 3144Strain fitness (log2 ratio) -3 -2 -1 0 1at 3141.455 kb on - strandat 3141.519 kb on + strandat 3141.544 kb on + strandat 3141.549 kb on + strandat 3141.549 kb on + strandat 3141.549 kb on + strandat 3141.684 kb on + strandat 3141.684 kb on + strandat 3141.718 kb on + strandat 3141.718 kb on + strandat 3141.742 kb on + strandat 3141.743 kb on - strandat 3141.747 kb on + strandat 3141.764 kb on + strandat 3141.896 kb on + strand, within IAI46_14830at 3141.939 kb on + strand, within IAI46_14830at 3141.939 kb on + strand, within IAI46_14830at 3141.940 kb on - strand, within IAI46_14830at 3141.984 kb on - strand, within IAI46_14830at 3142.184 kb on + strand, within IAI46_14830at 3142.184 kb on + strand, within IAI46_14830at 3142.185 kb on - strand, within IAI46_14830at 3142.377 kb on + strandat 3142.378 kb on - strandat 3142.422 kb on - strandat 3142.658 kb on + strand, within IAI46_14835at 3142.680 kb on - strand, within IAI46_14835at 3142.767 kb on - strand, within IAI46_14835at 3142.771 kb on - strand, within IAI46_14835at 3142.906 kb on - strand, within IAI46_14835at 3142.906 kb on - strand, within IAI46_14835at 3142.906 kb on - strand, within IAI46_14835at 3142.946 kb on + strand, within IAI46_14835at 3143.235 kb on - strandat 3143.272 kb on + strandat 3143.277 kb on + strandat 3143.278 kb on - strandat 3143.355 kb on + strandat 3143.532 kb on + strand, within IAI46_14840at 3143.533 kb on - strand, within IAI46_14840at 3143.574 kb on - strand, within IAI46_14840at 3143.789 kb on + strand, within IAI46_14840at 3143.850 kb on + strand, within IAI46_14840at 3143.996 kb on + strand, within IAI46_14840at 3143.997 kb on - strand, within IAI46_14840at 3144.072 kb on - strandat 3144.072 kb on - strandat 3144.083 kb on - strandat 3144.154 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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3,141,455 - -0.3
3,141,519 + -1.2
3,141,544 + +0.3
3,141,549 + -0.8
3,141,549 + +0.4
3,141,549 + -0.8
3,141,684 + +0.6
3,141,684 + -1.1
3,141,718 + -2.1
3,141,718 + -0.1
3,141,742 + -0.4
3,141,743 - +1.7
3,141,747 + +0.1
3,141,764 + -0.6
3,141,896 + IAI46_14830 0.26 +0.8
3,141,939 + IAI46_14830 0.33 -0.0
3,141,939 + IAI46_14830 0.33 -1.5
3,141,940 - IAI46_14830 0.33 +0.7
3,141,984 - IAI46_14830 0.41 -0.4
3,142,184 + IAI46_14830 0.76 -0.3
3,142,184 + IAI46_14830 0.76 +1.1
3,142,185 - IAI46_14830 0.76 -0.9
3,142,377 + +0.7
3,142,378 - +0.7
3,142,422 - -0.6
3,142,658 + IAI46_14835 0.29 -0.2
3,142,680 - IAI46_14835 0.32 -2.9
3,142,767 - IAI46_14835 0.42 -0.2
3,142,771 - IAI46_14835 0.43 -1.2
3,142,906 - IAI46_14835 0.59 +0.1
3,142,906 - IAI46_14835 0.59 -0.9
3,142,906 - IAI46_14835 0.59 -0.3
3,142,946 + IAI46_14835 0.64 -0.0
3,143,235 - -0.4
3,143,272 + +0.5
3,143,277 + +1.4
3,143,278 - +1.4
3,143,355 + +0.4
3,143,532 + IAI46_14840 0.21 +0.7
3,143,533 - IAI46_14840 0.21 +0.5
3,143,574 - IAI46_14840 0.26 +0.6
3,143,789 + IAI46_14840 0.56 -0.1
3,143,850 + IAI46_14840 0.65 -0.1
3,143,996 + IAI46_14840 0.85 +0.4
3,143,997 - IAI46_14840 0.85 -1.5
3,144,072 - -3.0
3,144,072 - +0.4
3,144,083 - -1.0
3,144,154 + -0.3

Or see this region's nucleotide sequence