Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14605 and IAI46_14610 are separated by 78 nucleotides IAI46_14610 and IAI46_14615 overlap by 4 nucleotides IAI46_14615 and IAI46_14620 are separated by 69 nucleotides
IAI46_14605: IAI46_14605 - zinc ABC transporter substrate-binding protein ZnuA, at 3,096,804 to 3,097,769
_14605
IAI46_14610: IAI46_14610 - zinc ABC transporter ATP-binding protein ZnuC, at 3,097,848 to 3,098,606
_14610
IAI46_14615: IAI46_14615 - zinc ABC transporter permease subunit ZnuB, at 3,098,603 to 3,099,388
_14615
IAI46_14620: IAI46_14620 - Holliday junction branch migration DNA helicase RuvB, at 3,099,458 to 3,100,462
_14620
Position (kb)
3098
3099
3100 Strain fitness (log2 ratio)
-1
0
1
2 at 3097.771 kb on - strand at 3097.808 kb on - strand at 3097.898 kb on + strand at 3097.899 kb on - strand at 3097.899 kb on - strand at 3098.025 kb on - strand, within IAI46_14610 at 3098.147 kb on + strand, within IAI46_14610 at 3098.733 kb on + strand, within IAI46_14615 at 3098.733 kb on + strand, within IAI46_14615 at 3098.942 kb on + strand, within IAI46_14615 at 3099.012 kb on + strand, within IAI46_14615 at 3099.012 kb on + strand, within IAI46_14615 at 3099.306 kb on - strand, within IAI46_14615 at 3099.306 kb on - strand, within IAI46_14615 at 3099.333 kb on + strand at 3099.405 kb on - strand at 3099.445 kb on + strand at 3099.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 3,097,771 - +2.0 3,097,808 - +0.5 3,097,898 + -0.2 3,097,899 - -0.6 3,097,899 - +0.4 3,098,025 - IAI46_14610 0.23 -0.3 3,098,147 + IAI46_14610 0.39 -0.4 3,098,733 + IAI46_14615 0.17 +0.4 3,098,733 + IAI46_14615 0.17 +1.4 3,098,942 + IAI46_14615 0.43 -0.3 3,099,012 + IAI46_14615 0.52 -0.2 3,099,012 + IAI46_14615 0.52 -1.4 3,099,306 - IAI46_14615 0.89 +0.1 3,099,306 - IAI46_14615 0.89 +0.8 3,099,333 + -0.2 3,099,405 - +0.4 3,099,445 + +1.0 3,099,452 + +0.8
Or see this region's nucleotide sequence