Strain Fitness in Serratia liquefaciens MT49 around IAI46_14615

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14605 and IAI46_14610 are separated by 78 nucleotidesIAI46_14610 and IAI46_14615 overlap by 4 nucleotidesIAI46_14615 and IAI46_14620 are separated by 69 nucleotides IAI46_14605: IAI46_14605 - zinc ABC transporter substrate-binding protein ZnuA, at 3,096,804 to 3,097,769 _14605 IAI46_14610: IAI46_14610 - zinc ABC transporter ATP-binding protein ZnuC, at 3,097,848 to 3,098,606 _14610 IAI46_14615: IAI46_14615 - zinc ABC transporter permease subunit ZnuB, at 3,098,603 to 3,099,388 _14615 IAI46_14620: IAI46_14620 - Holliday junction branch migration DNA helicase RuvB, at 3,099,458 to 3,100,462 _14620 Position (kb) 3098 3099 3100Strain fitness (log2 ratio) -1 0 1 2at 3097.771 kb on - strandat 3097.808 kb on - strandat 3097.898 kb on + strandat 3097.899 kb on - strandat 3097.899 kb on - strandat 3098.025 kb on - strand, within IAI46_14610at 3098.147 kb on + strand, within IAI46_14610at 3098.733 kb on + strand, within IAI46_14615at 3098.733 kb on + strand, within IAI46_14615at 3098.942 kb on + strand, within IAI46_14615at 3099.012 kb on + strand, within IAI46_14615at 3099.012 kb on + strand, within IAI46_14615at 3099.306 kb on - strand, within IAI46_14615at 3099.306 kb on - strand, within IAI46_14615at 3099.333 kb on + strandat 3099.405 kb on - strandat 3099.445 kb on + strandat 3099.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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3,097,771 - +2.0
3,097,808 - +0.5
3,097,898 + -0.2
3,097,899 - -0.6
3,097,899 - +0.4
3,098,025 - IAI46_14610 0.23 -0.3
3,098,147 + IAI46_14610 0.39 -0.4
3,098,733 + IAI46_14615 0.17 +0.4
3,098,733 + IAI46_14615 0.17 +1.4
3,098,942 + IAI46_14615 0.43 -0.3
3,099,012 + IAI46_14615 0.52 -0.2
3,099,012 + IAI46_14615 0.52 -1.4
3,099,306 - IAI46_14615 0.89 +0.1
3,099,306 - IAI46_14615 0.89 +0.8
3,099,333 + -0.2
3,099,405 - +0.4
3,099,445 + +1.0
3,099,452 + +0.8

Or see this region's nucleotide sequence