Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13930 and IAI46_13935 are separated by 6 nucleotides IAI46_13935 and IAI46_13940 are separated by 289 nucleotides
IAI46_13930: IAI46_13930 - lipopolysaccharide assembly protein LapB, at 2,957,815 to 2,958,984
_13930
IAI46_13935: IAI46_13935 - LapA family protein, at 2,958,991 to 2,959,293
_13935
IAI46_13940: IAI46_13940 - phosphatidylglycerophosphatase B, at 2,959,583 to 2,960,353
_13940
Position (kb)
2958
2959
2960 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2959.204 kb on - strand, within IAI46_13935 at 2959.358 kb on - strand at 2959.363 kb on - strand at 2959.410 kb on - strand at 2959.410 kb on - strand at 2959.410 kb on - strand at 2959.411 kb on + strand at 2959.411 kb on + strand at 2959.411 kb on + strand at 2959.412 kb on - strand at 2959.412 kb on - strand at 2959.412 kb on - strand at 2959.412 kb on - strand at 2959.413 kb on + strand at 2959.413 kb on + strand at 2959.413 kb on + strand at 2959.413 kb on + strand at 2959.414 kb on - strand at 2959.414 kb on - strand at 2959.414 kb on - strand at 2959.414 kb on - strand at 2959.479 kb on + strand at 2959.494 kb on - strand at 2959.505 kb on - strand at 2959.528 kb on + strand at 2959.533 kb on - strand at 2959.585 kb on - strand at 2959.803 kb on + strand, within IAI46_13940 at 2959.803 kb on + strand, within IAI46_13940 at 2959.811 kb on - strand, within IAI46_13940 at 2959.865 kb on - strand, within IAI46_13940 at 2959.989 kb on + strand, within IAI46_13940 at 2959.990 kb on - strand, within IAI46_13940
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 2,959,204 - IAI46_13935 0.70 -1.3 2,959,358 - -0.3 2,959,363 - -0.3 2,959,410 - +0.5 2,959,410 - +1.1 2,959,410 - +0.3 2,959,411 + +0.1 2,959,411 + +0.2 2,959,411 + -0.2 2,959,412 - -0.6 2,959,412 - +2.0 2,959,412 - -0.2 2,959,412 - +0.3 2,959,413 + +0.9 2,959,413 + +0.1 2,959,413 + -0.4 2,959,413 + -2.3 2,959,414 - -0.8 2,959,414 - -0.3 2,959,414 - +0.7 2,959,414 - +0.7 2,959,479 + +0.2 2,959,494 - +0.7 2,959,505 - +0.7 2,959,528 + -1.1 2,959,533 - +0.3 2,959,585 - +0.9 2,959,803 + IAI46_13940 0.29 -0.0 2,959,803 + IAI46_13940 0.29 +0.2 2,959,811 - IAI46_13940 0.30 -0.2 2,959,865 - IAI46_13940 0.37 -0.1 2,959,989 + IAI46_13940 0.53 -0.5 2,959,990 - IAI46_13940 0.53 -0.5
Or see this region's nucleotide sequence