Strain Fitness in Serratia liquefaciens MT49 around IAI46_13935

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13930 and IAI46_13935 are separated by 6 nucleotidesIAI46_13935 and IAI46_13940 are separated by 289 nucleotides IAI46_13930: IAI46_13930 - lipopolysaccharide assembly protein LapB, at 2,957,815 to 2,958,984 _13930 IAI46_13935: IAI46_13935 - LapA family protein, at 2,958,991 to 2,959,293 _13935 IAI46_13940: IAI46_13940 - phosphatidylglycerophosphatase B, at 2,959,583 to 2,960,353 _13940 Position (kb) 2958 2959 2960Strain fitness (log2 ratio) -2 -1 0 1 2at 2959.204 kb on - strand, within IAI46_13935at 2959.358 kb on - strandat 2959.363 kb on - strandat 2959.410 kb on - strandat 2959.410 kb on - strandat 2959.410 kb on - strandat 2959.411 kb on + strandat 2959.411 kb on + strandat 2959.411 kb on + strandat 2959.412 kb on - strandat 2959.412 kb on - strandat 2959.412 kb on - strandat 2959.412 kb on - strandat 2959.413 kb on + strandat 2959.413 kb on + strandat 2959.413 kb on + strandat 2959.413 kb on + strandat 2959.414 kb on - strandat 2959.414 kb on - strandat 2959.414 kb on - strandat 2959.414 kb on - strandat 2959.479 kb on + strandat 2959.494 kb on - strandat 2959.505 kb on - strandat 2959.528 kb on + strandat 2959.533 kb on - strandat 2959.585 kb on - strandat 2959.803 kb on + strand, within IAI46_13940at 2959.803 kb on + strand, within IAI46_13940at 2959.811 kb on - strand, within IAI46_13940at 2959.865 kb on - strand, within IAI46_13940at 2959.989 kb on + strand, within IAI46_13940at 2959.990 kb on - strand, within IAI46_13940

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,959,204 - IAI46_13935 0.70 -1.3
2,959,358 - -0.3
2,959,363 - -0.3
2,959,410 - +0.5
2,959,410 - +1.1
2,959,410 - +0.3
2,959,411 + +0.1
2,959,411 + +0.2
2,959,411 + -0.2
2,959,412 - -0.6
2,959,412 - +2.0
2,959,412 - -0.2
2,959,412 - +0.3
2,959,413 + +0.9
2,959,413 + +0.1
2,959,413 + -0.4
2,959,413 + -2.3
2,959,414 - -0.8
2,959,414 - -0.3
2,959,414 - +0.7
2,959,414 - +0.7
2,959,479 + +0.2
2,959,494 - +0.7
2,959,505 - +0.7
2,959,528 + -1.1
2,959,533 - +0.3
2,959,585 - +0.9
2,959,803 + IAI46_13940 0.29 -0.0
2,959,803 + IAI46_13940 0.29 +0.2
2,959,811 - IAI46_13940 0.30 -0.2
2,959,865 - IAI46_13940 0.37 -0.1
2,959,989 + IAI46_13940 0.53 -0.5
2,959,990 - IAI46_13940 0.53 -0.5

Or see this region's nucleotide sequence