Strain Fitness in Serratia liquefaciens MT49 around IAI46_13915

Experiment: No stress control, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13905 and IAI46_13910 are separated by 207 nucleotidesIAI46_13910 and IAI46_13915 are separated by 10 nucleotidesIAI46_13915 and IAI46_13920 are separated by 328 nucleotidesIAI46_13920 and IAI46_13925 are separated by 170 nucleotides IAI46_13905: IAI46_13905 - osmotically-inducible lipoprotein OsmB, at 2,955,210 to 2,955,428 _13905 IAI46_13910: IAI46_13910 - stress response translation initiation inhibitor YciH, at 2,955,636 to 2,955,962 _13910 IAI46_13915: IAI46_13915 - orotidine-5'-phosphate decarboxylase, at 2,955,973 to 2,956,701 _13915 IAI46_13920: IAI46_13920 - DUF1471 domain-containing protein, at 2,957,030 to 2,957,290 _13920 IAI46_13925: IAI46_13925 - Arc family DNA-binding protein, at 2,957,461 to 2,957,757 _13925 Position (kb) 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1at 2954.980 kb on + strandat 2954.984 kb on + strandat 2955.001 kb on + strandat 2955.040 kb on - strandat 2955.040 kb on - strandat 2955.163 kb on - strandat 2955.164 kb on + strandat 2955.164 kb on + strandat 2955.165 kb on - strandat 2955.168 kb on + strandat 2955.168 kb on + strandat 2955.168 kb on + strandat 2955.209 kb on + strandat 2955.224 kb on + strandat 2955.423 kb on - strandat 2955.426 kb on + strandat 2955.492 kb on + strandat 2955.493 kb on - strandat 2955.504 kb on + strandat 2955.527 kb on + strandat 2955.597 kb on + strandat 2955.598 kb on - strandat 2955.915 kb on - strand, within IAI46_13910at 2955.915 kb on - strand, within IAI46_13910at 2955.934 kb on + strandat 2955.934 kb on + strandat 2955.935 kb on - strandat 2956.052 kb on + strand, within IAI46_13915at 2956.052 kb on + strand, within IAI46_13915at 2956.052 kb on + strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.634 kb on + strandat 2956.729 kb on - strandat 2956.732 kb on + strandat 2956.732 kb on + strandat 2956.767 kb on - strandat 2956.816 kb on - strandat 2956.832 kb on - strandat 2956.832 kb on - strandat 2956.880 kb on + strandat 2956.992 kb on + strandat 2957.013 kb on - strandat 2957.229 kb on - strand, within IAI46_13920at 2957.252 kb on - strand, within IAI46_13920at 2957.278 kb on + strandat 2957.283 kb on - strandat 2957.288 kb on + strandat 2957.288 kb on + strandat 2957.289 kb on - strandat 2957.294 kb on - strandat 2957.294 kb on - strandat 2957.297 kb on - strandat 2957.300 kb on + strandat 2957.301 kb on - strandat 2957.301 kb on - strandat 2957.330 kb on - strandat 2957.424 kb on + strandat 2957.471 kb on + strandat 2957.475 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
remove
2,954,980 + -0.7
2,954,984 + +0.6
2,955,001 + +0.3
2,955,040 - +0.7
2,955,040 - -0.2
2,955,163 - -1.1
2,955,164 + -0.1
2,955,164 + +0.9
2,955,165 - -0.4
2,955,168 + -0.3
2,955,168 + -0.0
2,955,168 + +1.0
2,955,209 + -2.0
2,955,224 + +0.3
2,955,423 - -0.2
2,955,426 + +0.2
2,955,492 + +0.5
2,955,493 - -0.1
2,955,504 + +0.6
2,955,527 + +0.1
2,955,597 + +0.7
2,955,598 - +0.4
2,955,915 - IAI46_13910 0.85 +0.2
2,955,915 - IAI46_13910 0.85 -0.9
2,955,934 + -0.6
2,955,934 + -2.4
2,955,935 - +0.6
2,956,052 + IAI46_13915 0.11 -2.3
2,956,052 + IAI46_13915 0.11 -1.3
2,956,052 + IAI46_13915 0.11 -0.2
2,956,053 - IAI46_13915 0.11 -1.7
2,956,053 - IAI46_13915 0.11 -0.9
2,956,053 - IAI46_13915 0.11 -0.4
2,956,634 + +0.7
2,956,729 - -0.3
2,956,732 + -0.4
2,956,732 + +0.3
2,956,767 - -0.0
2,956,816 - -0.8
2,956,832 - -0.4
2,956,832 - -0.4
2,956,880 + -0.7
2,956,992 + +1.3
2,957,013 - +0.7
2,957,229 - IAI46_13920 0.76 -0.9
2,957,252 - IAI46_13920 0.85 -1.1
2,957,278 + -0.5
2,957,283 - +0.3
2,957,288 + +1.1
2,957,288 + -0.9
2,957,289 - -1.5
2,957,294 - +0.6
2,957,294 - +0.7
2,957,297 - +0.0
2,957,300 + -0.3
2,957,301 - +0.3
2,957,301 - -0.5
2,957,330 - +0.4
2,957,424 + +0.1
2,957,471 + -0.2
2,957,475 + +0.7

Or see this region's nucleotide sequence