Strain Fitness in Serratia liquefaciens MT49 around IAI46_13245

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13235 and IAI46_13240 are separated by 326 nucleotidesIAI46_13240 and IAI46_13245 are separated by 211 nucleotidesIAI46_13245 and IAI46_13250 are separated by 50 nucleotidesIAI46_13250 and IAI46_13255 are separated by 18 nucleotides IAI46_13235: IAI46_13235 - tagatose bisphosphate family class II aldolase, at 2,823,997 to 2,824,851 _13235 IAI46_13240: IAI46_13240 - hypothetical protein, at 2,825,178 to 2,825,492 _13240 IAI46_13245: IAI46_13245 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 2,825,704 to 2,826,228 _13245 IAI46_13250: IAI46_13250 - glycine zipper family protein, at 2,826,279 to 2,826,794 _13250 IAI46_13255: IAI46_13255 - hypothetical protein, at 2,826,813 to 2,827,157 _13255 Position (kb) 2825 2826 2827Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2824.772 kb on - strandat 2824.772 kb on - strandat 2824.859 kb on + strandat 2824.859 kb on + strandat 2824.947 kb on - strandat 2825.050 kb on - strandat 2825.057 kb on - strandat 2825.274 kb on - strand, within IAI46_13240at 2825.274 kb on - strand, within IAI46_13240at 2825.275 kb on + strand, within IAI46_13240at 2825.309 kb on + strand, within IAI46_13240at 2825.313 kb on - strand, within IAI46_13240at 2825.384 kb on + strand, within IAI46_13240at 2825.405 kb on + strand, within IAI46_13240at 2825.487 kb on - strandat 2825.491 kb on - strandat 2825.491 kb on - strandat 2825.491 kb on - strandat 2825.491 kb on - strandat 2825.529 kb on - strandat 2825.727 kb on + strandat 2825.728 kb on - strandat 2825.833 kb on - strand, within IAI46_13245at 2825.874 kb on + strand, within IAI46_13245at 2826.025 kb on + strand, within IAI46_13245at 2826.026 kb on - strand, within IAI46_13245at 2826.039 kb on + strand, within IAI46_13245at 2826.040 kb on - strand, within IAI46_13245at 2826.158 kb on - strand, within IAI46_13245at 2826.258 kb on - strandat 2826.280 kb on + strandat 2826.292 kb on + strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.323 kb on + strandat 2826.323 kb on + strandat 2826.340 kb on - strand, within IAI46_13250at 2826.372 kb on + strand, within IAI46_13250at 2826.372 kb on + strand, within IAI46_13250at 2826.373 kb on - strand, within IAI46_13250at 2826.395 kb on + strand, within IAI46_13250at 2826.395 kb on + strand, within IAI46_13250at 2826.396 kb on - strand, within IAI46_13250at 2826.396 kb on - strand, within IAI46_13250at 2826.396 kb on - strand, within IAI46_13250at 2826.396 kb on - strand, within IAI46_13250at 2826.418 kb on + strand, within IAI46_13250at 2826.419 kb on - strand, within IAI46_13250at 2826.504 kb on - strand, within IAI46_13250at 2826.628 kb on - strand, within IAI46_13250at 2826.683 kb on - strand, within IAI46_13250at 2826.683 kb on - strand, within IAI46_13250at 2826.884 kb on - strand, within IAI46_13255at 2826.904 kb on + strand, within IAI46_13255at 2826.904 kb on + strand, within IAI46_13255at 2826.907 kb on + strand, within IAI46_13255at 2826.907 kb on + strand, within IAI46_13255at 2826.908 kb on - strand, within IAI46_13255at 2826.931 kb on - strand, within IAI46_13255at 2826.935 kb on - strand, within IAI46_13255at 2826.962 kb on - strand, within IAI46_13255at 2826.962 kb on - strand, within IAI46_13255at 2826.962 kb on - strand, within IAI46_13255at 2826.962 kb on - strand, within IAI46_13255at 2826.982 kb on + strand, within IAI46_13255at 2826.983 kb on - strand, within IAI46_13255at 2826.985 kb on + strand, within IAI46_13255at 2827.014 kb on + strand, within IAI46_13255at 2827.014 kb on + strand, within IAI46_13255at 2827.015 kb on - strand, within IAI46_13255at 2827.015 kb on - strand, within IAI46_13255at 2827.015 kb on - strand, within IAI46_13255at 2827.015 kb on - strand, within IAI46_13255at 2827.015 kb on - strand, within IAI46_13255at 2827.015 kb on - strand, within IAI46_13255at 2827.017 kb on + strand, within IAI46_13255at 2827.051 kb on + strand, within IAI46_13255at 2827.052 kb on - strand, within IAI46_13255at 2827.064 kb on - strand, within IAI46_13255at 2827.066 kb on + strand, within IAI46_13255at 2827.079 kb on - strand, within IAI46_13255at 2827.079 kb on - strand, within IAI46_13255at 2827.103 kb on + strand, within IAI46_13255at 2827.104 kb on - strand, within IAI46_13255

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,824,772 - -1.2
2,824,772 - -1.2
2,824,859 + -0.2
2,824,859 + -0.4
2,824,947 - +0.2
2,825,050 - +0.2
2,825,057 - -0.3
2,825,274 - IAI46_13240 0.30 +0.2
2,825,274 - IAI46_13240 0.30 -0.4
2,825,275 + IAI46_13240 0.31 -2.5
2,825,309 + IAI46_13240 0.42 +0.2
2,825,313 - IAI46_13240 0.43 +0.0
2,825,384 + IAI46_13240 0.65 -1.0
2,825,405 + IAI46_13240 0.72 +2.1
2,825,487 - +0.6
2,825,491 - +1.6
2,825,491 - -0.4
2,825,491 - +1.6
2,825,491 - +0.3
2,825,529 - +0.3
2,825,727 + +0.9
2,825,728 - -0.0
2,825,833 - IAI46_13245 0.25 -0.5
2,825,874 + IAI46_13245 0.32 -0.7
2,826,025 + IAI46_13245 0.61 -0.4
2,826,026 - IAI46_13245 0.61 -0.1
2,826,039 + IAI46_13245 0.64 -0.2
2,826,040 - IAI46_13245 0.64 -0.2
2,826,158 - IAI46_13245 0.86 -0.3
2,826,258 - +3.1
2,826,280 + +0.1
2,826,292 + +0.0
2,826,293 - -0.6
2,826,293 - -0.9
2,826,323 + -0.4
2,826,323 + +0.3
2,826,340 - IAI46_13250 0.12 +0.7
2,826,372 + IAI46_13250 0.18 -0.4
2,826,372 + IAI46_13250 0.18 +0.6
2,826,373 - IAI46_13250 0.18 +0.0
2,826,395 + IAI46_13250 0.22 +1.0
2,826,395 + IAI46_13250 0.22 -0.4
2,826,396 - IAI46_13250 0.23 +0.0
2,826,396 - IAI46_13250 0.23 -0.5
2,826,396 - IAI46_13250 0.23 -0.3
2,826,396 - IAI46_13250 0.23 -0.5
2,826,418 + IAI46_13250 0.27 +0.3
2,826,419 - IAI46_13250 0.27 +0.6
2,826,504 - IAI46_13250 0.44 +0.0
2,826,628 - IAI46_13250 0.68 -0.1
2,826,683 - IAI46_13250 0.78 -1.4
2,826,683 - IAI46_13250 0.78 +0.0
2,826,884 - IAI46_13255 0.21 +0.5
2,826,904 + IAI46_13255 0.26 +0.0
2,826,904 + IAI46_13255 0.26 +0.8
2,826,907 + IAI46_13255 0.27 -0.0
2,826,907 + IAI46_13255 0.27 -0.8
2,826,908 - IAI46_13255 0.28 -0.2
2,826,931 - IAI46_13255 0.34 -0.2
2,826,935 - IAI46_13255 0.35 -0.1
2,826,962 - IAI46_13255 0.43 -0.5
2,826,962 - IAI46_13255 0.43 +0.6
2,826,962 - IAI46_13255 0.43 +0.3
2,826,962 - IAI46_13255 0.43 -0.5
2,826,982 + IAI46_13255 0.49 -1.5
2,826,983 - IAI46_13255 0.49 -0.4
2,826,985 + IAI46_13255 0.50 -0.2
2,827,014 + IAI46_13255 0.58 +0.8
2,827,014 + IAI46_13255 0.58 +1.9
2,827,015 - IAI46_13255 0.59 -0.7
2,827,015 - IAI46_13255 0.59 +0.2
2,827,015 - IAI46_13255 0.59 +0.8
2,827,015 - IAI46_13255 0.59 -1.2
2,827,015 - IAI46_13255 0.59 -0.8
2,827,015 - IAI46_13255 0.59 +0.5
2,827,017 + IAI46_13255 0.59 -0.5
2,827,051 + IAI46_13255 0.69 +1.0
2,827,052 - IAI46_13255 0.69 -0.3
2,827,064 - IAI46_13255 0.73 -1.8
2,827,066 + IAI46_13255 0.73 +0.0
2,827,079 - IAI46_13255 0.77 -0.0
2,827,079 - IAI46_13255 0.77 +0.3
2,827,103 + IAI46_13255 0.84 -1.6
2,827,104 - IAI46_13255 0.84 -0.0

Or see this region's nucleotide sequence