Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12490 and IAI46_12495 are separated by 11 nucleotides IAI46_12495 and IAI46_12500 are separated by 161 nucleotides IAI46_12500 and IAI46_12505 overlap by 8 nucleotides IAI46_12505 and IAI46_12510 overlap by 4 nucleotides
IAI46_12490: IAI46_12490 - formate dehydrogenase subunit alpha, at 2,655,955 to 2,658,111
_12490
IAI46_12495: IAI46_12495 - electron transport protein HydN, at 2,658,123 to 2,658,665
_12495
IAI46_12500: IAI46_12500 - hydrogenase maturation peptidase HycI, at 2,658,827 to 2,659,297
_12500
IAI46_12505: IAI46_12505 - formate hydrogenlyase maturation HycH family protein, at 2,659,290 to 2,659,706
_12505
IAI46_12510: IAI46_12510 - NADH-quinone oxidoreductase subunit B family protein, at 2,659,703 to 2,660,500
_12510
Position (kb)
2658
2659
2660 Strain fitness (log2 ratio)
-2
-1
0
1 at 2657.829 kb on + strand, within IAI46_12490 at 2657.976 kb on - strand at 2658.084 kb on - strand at 2658.669 kb on + strand at 2658.670 kb on - strand at 2659.015 kb on + strand, within IAI46_12500 at 2659.027 kb on + strand, within IAI46_12500 at 2659.437 kb on - strand, within IAI46_12505 at 2659.455 kb on + strand, within IAI46_12505 at 2659.612 kb on + strand, within IAI46_12505 at 2659.613 kb on - strand, within IAI46_12505 at 2659.613 kb on - strand, within IAI46_12505 at 2660.076 kb on + strand, within IAI46_12510 at 2660.077 kb on - strand, within IAI46_12510 at 2660.077 kb on - strand, within IAI46_12510 at 2660.077 kb on - strand, within IAI46_12510 at 2660.180 kb on - strand, within IAI46_12510
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 2,657,829 + IAI46_12490 0.87 +1.1 2,657,976 - -0.7 2,658,084 - +0.1 2,658,669 + +1.0 2,658,670 - +0.2 2,659,015 + IAI46_12500 0.40 -1.0 2,659,027 + IAI46_12500 0.42 -0.4 2,659,437 - IAI46_12505 0.35 +0.3 2,659,455 + IAI46_12505 0.40 -0.6 2,659,612 + IAI46_12505 0.77 +1.1 2,659,613 - IAI46_12505 0.77 -0.8 2,659,613 - IAI46_12505 0.77 -0.5 2,660,076 + IAI46_12510 0.47 +0.1 2,660,077 - IAI46_12510 0.47 +0.2 2,660,077 - IAI46_12510 0.47 -2.2 2,660,077 - IAI46_12510 0.47 -0.5 2,660,180 - IAI46_12510 0.60 -0.5
Or see this region's nucleotide sequence