Strain Fitness in Serratia liquefaciens MT49 around IAI46_12500

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12490 and IAI46_12495 are separated by 11 nucleotidesIAI46_12495 and IAI46_12500 are separated by 161 nucleotidesIAI46_12500 and IAI46_12505 overlap by 8 nucleotidesIAI46_12505 and IAI46_12510 overlap by 4 nucleotides IAI46_12490: IAI46_12490 - formate dehydrogenase subunit alpha, at 2,655,955 to 2,658,111 _12490 IAI46_12495: IAI46_12495 - electron transport protein HydN, at 2,658,123 to 2,658,665 _12495 IAI46_12500: IAI46_12500 - hydrogenase maturation peptidase HycI, at 2,658,827 to 2,659,297 _12500 IAI46_12505: IAI46_12505 - formate hydrogenlyase maturation HycH family protein, at 2,659,290 to 2,659,706 _12505 IAI46_12510: IAI46_12510 - NADH-quinone oxidoreductase subunit B family protein, at 2,659,703 to 2,660,500 _12510 Position (kb) 2658 2659 2660Strain fitness (log2 ratio) -2 -1 0 1at 2657.829 kb on + strand, within IAI46_12490at 2657.976 kb on - strandat 2658.084 kb on - strandat 2658.669 kb on + strandat 2658.670 kb on - strandat 2659.015 kb on + strand, within IAI46_12500at 2659.027 kb on + strand, within IAI46_12500at 2659.437 kb on - strand, within IAI46_12505at 2659.455 kb on + strand, within IAI46_12505at 2659.612 kb on + strand, within IAI46_12505at 2659.613 kb on - strand, within IAI46_12505at 2659.613 kb on - strand, within IAI46_12505at 2660.076 kb on + strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.180 kb on - strand, within IAI46_12510

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,657,829 + IAI46_12490 0.87 +1.1
2,657,976 - -0.7
2,658,084 - +0.1
2,658,669 + +1.0
2,658,670 - +0.2
2,659,015 + IAI46_12500 0.40 -1.0
2,659,027 + IAI46_12500 0.42 -0.4
2,659,437 - IAI46_12505 0.35 +0.3
2,659,455 + IAI46_12505 0.40 -0.6
2,659,612 + IAI46_12505 0.77 +1.1
2,659,613 - IAI46_12505 0.77 -0.8
2,659,613 - IAI46_12505 0.77 -0.5
2,660,076 + IAI46_12510 0.47 +0.1
2,660,077 - IAI46_12510 0.47 +0.2
2,660,077 - IAI46_12510 0.47 -2.2
2,660,077 - IAI46_12510 0.47 -0.5
2,660,180 - IAI46_12510 0.60 -0.5

Or see this region's nucleotide sequence