Strain Fitness in Serratia liquefaciens MT49 around IAI46_11665

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11655 and IAI46_11660 are separated by 58 nucleotidesIAI46_11660 and IAI46_11665 are separated by 89 nucleotidesIAI46_11665 and IAI46_11670 overlap by 11 nucleotides IAI46_11655: IAI46_11655 - class II fumarate hydratase, at 2,459,983 to 2,461,380 _11655 IAI46_11660: IAI46_11660 - YafY family transcriptional regulator, at 2,461,439 to 2,462,128 _11660 IAI46_11665: IAI46_11665 - VOC family protein, at 2,462,218 to 2,462,586 _11665 IAI46_11670: IAI46_11670 - DNA replication terminus site-binding protein, at 2,462,576 to 2,463,514 _11670 Position (kb) 2462 2463Strain fitness (log2 ratio) -1 0 1at 2461.228 kb on - strand, within IAI46_11655at 2461.228 kb on - strand, within IAI46_11655at 2461.343 kb on + strandat 2461.343 kb on + strandat 2461.343 kb on + strandat 2461.378 kb on + strandat 2461.414 kb on + strandat 2461.414 kb on + strandat 2461.477 kb on - strandat 2461.613 kb on + strand, within IAI46_11660at 2461.613 kb on + strand, within IAI46_11660at 2461.613 kb on + strand, within IAI46_11660at 2461.614 kb on - strand, within IAI46_11660at 2461.738 kb on + strand, within IAI46_11660at 2461.739 kb on - strand, within IAI46_11660at 2461.958 kb on + strand, within IAI46_11660at 2462.045 kb on - strand, within IAI46_11660at 2462.126 kb on + strandat 2462.232 kb on + strandat 2462.232 kb on + strandat 2462.232 kb on + strandat 2462.233 kb on - strandat 2462.246 kb on - strandat 2462.490 kb on + strand, within IAI46_11665at 2462.491 kb on - strand, within IAI46_11665at 2462.527 kb on - strand, within IAI46_11665at 2462.569 kb on + strandat 2462.598 kb on + strandat 2462.649 kb on + strandat 2462.653 kb on + strandat 2462.654 kb on - strandat 2462.730 kb on - strand, within IAI46_11670at 2462.785 kb on - strand, within IAI46_11670at 2462.785 kb on - strand, within IAI46_11670at 2462.906 kb on - strand, within IAI46_11670at 2462.973 kb on - strand, within IAI46_11670at 2462.973 kb on - strand, within IAI46_11670at 2462.984 kb on - strand, within IAI46_11670at 2462.986 kb on + strand, within IAI46_11670at 2462.986 kb on + strand, within IAI46_11670at 2462.987 kb on - strand, within IAI46_11670at 2462.987 kb on - strand, within IAI46_11670at 2463.043 kb on + strand, within IAI46_11670at 2463.049 kb on - strand, within IAI46_11670at 2463.133 kb on + strand, within IAI46_11670at 2463.134 kb on - strand, within IAI46_11670at 2463.195 kb on + strand, within IAI46_11670at 2463.284 kb on + strand, within IAI46_11670at 2463.295 kb on - strand, within IAI46_11670at 2463.357 kb on - strand, within IAI46_11670at 2463.422 kb on + strandat 2463.432 kb on - strandat 2463.509 kb on - strandat 2463.543 kb on - strandat 2463.543 kb on - strandat 2463.580 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,461,228 - IAI46_11655 0.89 +0.4
2,461,228 - IAI46_11655 0.89 +0.9
2,461,343 + +0.0
2,461,343 + -0.2
2,461,343 + -0.4
2,461,378 + +0.3
2,461,414 + +0.7
2,461,414 + +0.6
2,461,477 - +0.5
2,461,613 + IAI46_11660 0.25 +0.7
2,461,613 + IAI46_11660 0.25 +1.1
2,461,613 + IAI46_11660 0.25 +0.3
2,461,614 - IAI46_11660 0.25 -0.3
2,461,738 + IAI46_11660 0.43 +1.2
2,461,739 - IAI46_11660 0.43 +0.8
2,461,958 + IAI46_11660 0.75 -0.3
2,462,045 - IAI46_11660 0.88 +0.4
2,462,126 + +0.4
2,462,232 + +1.6
2,462,232 + +0.5
2,462,232 + +0.0
2,462,233 - +1.1
2,462,246 - -0.6
2,462,490 + IAI46_11665 0.74 -0.7
2,462,491 - IAI46_11665 0.74 -1.1
2,462,527 - IAI46_11665 0.84 +0.8
2,462,569 + +0.2
2,462,598 + +0.0
2,462,649 + +1.5
2,462,653 + +0.4
2,462,654 - -0.4
2,462,730 - IAI46_11670 0.16 +0.4
2,462,785 - IAI46_11670 0.22 -0.2
2,462,785 - IAI46_11670 0.22 -1.3
2,462,906 - IAI46_11670 0.35 +0.9
2,462,973 - IAI46_11670 0.42 -1.0
2,462,973 - IAI46_11670 0.42 -0.5
2,462,984 - IAI46_11670 0.43 +0.1
2,462,986 + IAI46_11670 0.44 +0.0
2,462,986 + IAI46_11670 0.44 +1.2
2,462,987 - IAI46_11670 0.44 +0.6
2,462,987 - IAI46_11670 0.44 -0.1
2,463,043 + IAI46_11670 0.50 +0.6
2,463,049 - IAI46_11670 0.50 -0.7
2,463,133 + IAI46_11670 0.59 -0.0
2,463,134 - IAI46_11670 0.59 +0.9
2,463,195 + IAI46_11670 0.66 -1.2
2,463,284 + IAI46_11670 0.75 +0.1
2,463,295 - IAI46_11670 0.77 -1.1
2,463,357 - IAI46_11670 0.83 -1.0
2,463,422 + -0.5
2,463,432 - +0.1
2,463,509 - +0.0
2,463,543 - -0.4
2,463,543 - -0.3
2,463,580 + +0.6

Or see this region's nucleotide sequence