Strain Fitness in Serratia liquefaciens MT49 around IAI46_11495

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11485 and IAI46_11490 overlap by 1 nucleotidesIAI46_11490 and IAI46_11495 are separated by 144 nucleotidesIAI46_11495 and IAI46_11500 are separated by 159 nucleotides IAI46_11485: IAI46_11485 - electron transport complex subunit RsxB, at 2,424,645 to 2,425,217 _11485 IAI46_11490: IAI46_11490 - electron transport complex subunit RsxA, at 2,425,217 to 2,425,798 _11490 IAI46_11495: IAI46_11495 - DUF2569 domain-containing protein, at 2,425,943 to 2,426,383 _11495 IAI46_11500: IAI46_11500 - L-arabinose isomerase, at 2,426,543 to 2,428,048 _11500 Position (kb) 2425 2426 2427Strain fitness (log2 ratio) -1 0 1 2at 2425.501 kb on - strand, within IAI46_11490at 2425.588 kb on - strand, within IAI46_11490at 2425.588 kb on - strand, within IAI46_11490at 2425.613 kb on - strand, within IAI46_11490at 2425.664 kb on - strand, within IAI46_11490at 2425.664 kb on - strand, within IAI46_11490at 2425.667 kb on - strand, within IAI46_11490at 2425.763 kb on + strandat 2425.881 kb on - strandat 2425.987 kb on + strand, within IAI46_11495at 2425.987 kb on + strand, within IAI46_11495at 2425.987 kb on + strand, within IAI46_11495at 2425.987 kb on + strand, within IAI46_11495at 2425.988 kb on - strand, within IAI46_11495at 2425.988 kb on - strand, within IAI46_11495at 2425.990 kb on - strand, within IAI46_11495at 2425.990 kb on - strand, within IAI46_11495at 2426.037 kb on - strand, within IAI46_11495at 2426.091 kb on - strand, within IAI46_11495at 2426.170 kb on + strand, within IAI46_11495at 2426.208 kb on + strand, within IAI46_11495at 2426.209 kb on - strand, within IAI46_11495at 2426.216 kb on + strand, within IAI46_11495at 2426.247 kb on + strand, within IAI46_11495at 2426.328 kb on + strand, within IAI46_11495at 2426.360 kb on - strandat 2426.360 kb on - strandat 2426.383 kb on + strandat 2426.460 kb on + strandat 2426.521 kb on + strandat 2426.566 kb on - strandat 2426.566 kb on - strandat 2426.946 kb on - strand, within IAI46_11500at 2426.947 kb on + strand, within IAI46_11500at 2427.039 kb on + strand, within IAI46_11500at 2427.039 kb on + strand, within IAI46_11500at 2427.046 kb on - strand, within IAI46_11500at 2427.238 kb on + strand, within IAI46_11500at 2427.239 kb on - strand, within IAI46_11500

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,425,501 - IAI46_11490 0.49 +0.5
2,425,588 - IAI46_11490 0.64 +0.6
2,425,588 - IAI46_11490 0.64 -0.3
2,425,613 - IAI46_11490 0.68 -0.3
2,425,664 - IAI46_11490 0.77 -1.2
2,425,664 - IAI46_11490 0.77 +0.1
2,425,667 - IAI46_11490 0.77 -1.5
2,425,763 + -0.5
2,425,881 - +0.2
2,425,987 + IAI46_11495 0.10 +0.5
2,425,987 + IAI46_11495 0.10 -0.1
2,425,987 + IAI46_11495 0.10 -0.4
2,425,987 + IAI46_11495 0.10 -0.5
2,425,988 - IAI46_11495 0.10 -0.1
2,425,988 - IAI46_11495 0.10 +1.0
2,425,990 - IAI46_11495 0.11 -1.5
2,425,990 - IAI46_11495 0.11 -0.3
2,426,037 - IAI46_11495 0.21 -0.6
2,426,091 - IAI46_11495 0.34 +0.6
2,426,170 + IAI46_11495 0.51 +0.2
2,426,208 + IAI46_11495 0.60 -0.7
2,426,209 - IAI46_11495 0.60 +0.3
2,426,216 + IAI46_11495 0.62 -0.5
2,426,247 + IAI46_11495 0.69 +0.3
2,426,328 + IAI46_11495 0.87 -0.6
2,426,360 - +0.5
2,426,360 - -0.2
2,426,383 + +0.8
2,426,460 + -1.5
2,426,521 + -0.6
2,426,566 - +1.7
2,426,566 - +0.3
2,426,946 - IAI46_11500 0.27 +2.6
2,426,947 + IAI46_11500 0.27 +0.0
2,427,039 + IAI46_11500 0.33 -1.2
2,427,039 + IAI46_11500 0.33 -0.8
2,427,046 - IAI46_11500 0.33 +0.2
2,427,238 + IAI46_11500 0.46 -0.6
2,427,239 - IAI46_11500 0.46 +0.2

Or see this region's nucleotide sequence