Strain Fitness in Serratia liquefaciens MT49 around IAI46_11180

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11175 and IAI46_11180 are separated by 142 nucleotidesIAI46_11180 and IAI46_11185 are separated by 308 nucleotides IAI46_11175: IAI46_11175 - L,D-transpeptidase family protein, at 2,363,018 to 2,364,031 _11175 IAI46_11180: IAI46_11180 - major outer membrane lipoprotein, at 2,364,174 to 2,364,410 _11180 IAI46_11185: IAI46_11185 - pyruvate kinase PykF, at 2,364,719 to 2,366,131 _11185 Position (kb) 2364 2365Strain fitness (log2 ratio) -2 -1 0 1at 2363.344 kb on - strand, within IAI46_11175at 2363.345 kb on + strand, within IAI46_11175at 2363.345 kb on + strand, within IAI46_11175at 2363.345 kb on + strand, within IAI46_11175at 2363.346 kb on - strand, within IAI46_11175at 2363.346 kb on - strand, within IAI46_11175at 2363.348 kb on + strand, within IAI46_11175at 2363.349 kb on - strand, within IAI46_11175at 2363.349 kb on - strand, within IAI46_11175at 2363.349 kb on - strand, within IAI46_11175at 2363.591 kb on + strand, within IAI46_11175at 2363.592 kb on - strand, within IAI46_11175at 2363.765 kb on + strand, within IAI46_11175at 2363.766 kb on - strand, within IAI46_11175at 2363.827 kb on + strand, within IAI46_11175at 2363.828 kb on - strand, within IAI46_11175at 2364.013 kb on + strandat 2364.036 kb on + strandat 2364.399 kb on - strandat 2364.399 kb on - strandat 2364.399 kb on - strandat 2364.412 kb on - strandat 2364.414 kb on - strandat 2364.445 kb on - strandat 2364.457 kb on - strandat 2364.495 kb on + strandat 2364.703 kb on + strandat 2364.704 kb on - strandat 2364.721 kb on - strandat 2364.721 kb on - strandat 2364.833 kb on - strandat 2364.968 kb on - strand, within IAI46_11185at 2364.968 kb on - strand, within IAI46_11185at 2365.319 kb on - strand, within IAI46_11185

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,363,344 - IAI46_11175 0.32 +1.5
2,363,345 + IAI46_11175 0.32 -0.3
2,363,345 + IAI46_11175 0.32 +0.2
2,363,345 + IAI46_11175 0.32 -0.3
2,363,346 - IAI46_11175 0.32 +0.2
2,363,346 - IAI46_11175 0.32 +0.6
2,363,348 + IAI46_11175 0.33 +1.0
2,363,349 - IAI46_11175 0.33 -0.7
2,363,349 - IAI46_11175 0.33 -0.2
2,363,349 - IAI46_11175 0.33 -0.1
2,363,591 + IAI46_11175 0.57 -0.4
2,363,592 - IAI46_11175 0.57 +0.2
2,363,765 + IAI46_11175 0.74 -0.4
2,363,766 - IAI46_11175 0.74 +0.3
2,363,827 + IAI46_11175 0.80 +0.3
2,363,828 - IAI46_11175 0.80 -2.7
2,364,013 + +0.6
2,364,036 + +0.5
2,364,399 - +0.9
2,364,399 - +0.1
2,364,399 - -0.2
2,364,412 - +0.4
2,364,414 - -0.0
2,364,445 - +0.2
2,364,457 - -0.2
2,364,495 + -0.2
2,364,703 + +0.5
2,364,704 - -1.2
2,364,721 - +1.2
2,364,721 - +1.4
2,364,833 - +1.2
2,364,968 - IAI46_11185 0.18 -0.8
2,364,968 - IAI46_11185 0.18 -1.7
2,365,319 - IAI46_11185 0.42 +0.4

Or see this region's nucleotide sequence