Strain Fitness in Serratia liquefaciens MT49 around IAI46_09800

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09790 and IAI46_09795 are separated by 154 nucleotidesIAI46_09795 and IAI46_09800 are separated by 82 nucleotidesIAI46_09800 and IAI46_09805 are separated by 171 nucleotidesIAI46_09805 and IAI46_09810 are separated by 13 nucleotides IAI46_09790: IAI46_09790 - 3-oxoacyl-ACP reductase FabG, at 2,073,714 to 2,074,448 _09790 IAI46_09795: IAI46_09795 - acyl carrier protein, at 2,074,603 to 2,074,839 _09795 IAI46_09800: IAI46_09800 - beta-ketoacyl-ACP synthase II, at 2,074,922 to 2,076,163 _09800 IAI46_09805: IAI46_09805 - aminodeoxychorismate lyase, at 2,076,335 to 2,077,132 _09805 IAI46_09810: IAI46_09810 - endolytic transglycosylase MltG, at 2,077,146 to 2,078,171 _09810 Position (kb) 2074 2075 2076 2077Strain fitness (log2 ratio) -1 0 1at 2074.499 kb on + strandat 2074.882 kb on + strandat 2074.888 kb on + strandat 2074.928 kb on - strandat 2074.983 kb on + strandat 2075.340 kb on + strand, within IAI46_09800at 2075.340 kb on + strand, within IAI46_09800at 2075.340 kb on + strand, within IAI46_09800at 2075.341 kb on - strand, within IAI46_09800at 2075.365 kb on + strand, within IAI46_09800at 2075.365 kb on + strand, within IAI46_09800at 2075.366 kb on - strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.414 kb on - strand, within IAI46_09800at 2075.449 kb on + strand, within IAI46_09800at 2075.787 kb on + strand, within IAI46_09800at 2075.822 kb on - strand, within IAI46_09800at 2075.949 kb on + strand, within IAI46_09800at 2076.161 kb on + strandat 2076.161 kb on + strandat 2076.162 kb on - strandat 2076.162 kb on - strandat 2076.298 kb on - strandat 2076.298 kb on - strandat 2076.334 kb on + strandat 2076.335 kb on - strandat 2076.335 kb on - strandat 2076.335 kb on - strandat 2076.416 kb on - strand, within IAI46_09805at 2076.608 kb on + strand, within IAI46_09805at 2076.671 kb on + strand, within IAI46_09805at 2076.974 kb on + strand, within IAI46_09805at 2076.986 kb on + strand, within IAI46_09805at 2077.047 kb on + strand, within IAI46_09805at 2077.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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2,074,499 + +0.8
2,074,882 + -0.4
2,074,888 + -1.4
2,074,928 - -0.3
2,074,983 + +0.0
2,075,340 + IAI46_09800 0.34 -0.8
2,075,340 + IAI46_09800 0.34 +0.0
2,075,340 + IAI46_09800 0.34 +0.5
2,075,341 - IAI46_09800 0.34 +0.9
2,075,365 + IAI46_09800 0.36 +0.2
2,075,365 + IAI46_09800 0.36 +0.2
2,075,366 - IAI46_09800 0.36 +1.4
2,075,372 + IAI46_09800 0.36 +0.7
2,075,372 + IAI46_09800 0.36 -1.3
2,075,372 + IAI46_09800 0.36 +0.9
2,075,372 + IAI46_09800 0.36 -0.8
2,075,372 + IAI46_09800 0.36 -1.7
2,075,414 - IAI46_09800 0.40 +0.5
2,075,449 + IAI46_09800 0.42 +0.4
2,075,787 + IAI46_09800 0.70 -0.7
2,075,822 - IAI46_09800 0.72 -0.1
2,075,949 + IAI46_09800 0.83 -0.3
2,076,161 + +1.6
2,076,161 + +1.4
2,076,162 - -1.1
2,076,162 - -0.2
2,076,298 - +0.3
2,076,298 - +0.4
2,076,334 + +0.3
2,076,335 - -0.4
2,076,335 - -0.6
2,076,335 - -0.6
2,076,416 - IAI46_09805 0.10 -0.6
2,076,608 + IAI46_09805 0.34 -0.3
2,076,671 + IAI46_09805 0.42 +0.7
2,076,974 + IAI46_09805 0.80 -0.1
2,076,986 + IAI46_09805 0.82 +0.4
2,077,047 + IAI46_09805 0.89 -0.0
2,077,106 + -1.3

Or see this region's nucleotide sequence