Strain Fitness in Serratia liquefaciens MT49 around IAI46_06920

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06915 and IAI46_06920 are separated by 119 nucleotidesIAI46_06920 and IAI46_06925 overlap by 4 nucleotidesIAI46_06925 and IAI46_06930 are separated by 167 nucleotides IAI46_06915: IAI46_06915 - D-lactate dehydrogenase, at 1,465,187 to 1,466,905 _06915 IAI46_06920: IAI46_06920 - type I methionyl aminopeptidase, at 1,467,025 to 1,467,819 _06920 IAI46_06925: IAI46_06925 - ParD-like family protein, at 1,467,816 to 1,468,019 _06925 IAI46_06930: IAI46_06930 - D-alanine--D-alanine ligase, at 1,468,187 to 1,469,290 _06930 Position (kb) 1467 1468Strain fitness (log2 ratio) -2 -1 0 1at 1466.067 kb on + strand, within IAI46_06915at 1466.068 kb on - strand, within IAI46_06915at 1466.224 kb on - strand, within IAI46_06915at 1466.296 kb on + strand, within IAI46_06915at 1466.398 kb on - strand, within IAI46_06915at 1466.398 kb on - strand, within IAI46_06915at 1466.539 kb on + strand, within IAI46_06915at 1466.540 kb on - strand, within IAI46_06915at 1466.611 kb on + strand, within IAI46_06915at 1466.612 kb on - strand, within IAI46_06915at 1466.620 kb on + strand, within IAI46_06915at 1466.621 kb on - strand, within IAI46_06915at 1466.632 kb on - strand, within IAI46_06915at 1466.632 kb on - strand, within IAI46_06915at 1466.632 kb on - strand, within IAI46_06915at 1466.864 kb on - strandat 1467.030 kb on - strandat 1467.030 kb on - strandat 1467.213 kb on + strand, within IAI46_06920at 1467.314 kb on + strand, within IAI46_06920at 1467.327 kb on + strand, within IAI46_06920at 1467.328 kb on - strand, within IAI46_06920at 1467.428 kb on + strand, within IAI46_06920at 1467.428 kb on + strand, within IAI46_06920at 1467.429 kb on - strand, within IAI46_06920at 1467.429 kb on - strand, within IAI46_06920at 1467.435 kb on + strand, within IAI46_06920at 1467.501 kb on + strand, within IAI46_06920at 1467.501 kb on + strand, within IAI46_06920at 1467.502 kb on - strand, within IAI46_06920at 1467.503 kb on + strand, within IAI46_06920at 1467.523 kb on - strand, within IAI46_06920at 1467.523 kb on - strand, within IAI46_06920at 1467.557 kb on - strand, within IAI46_06920at 1467.607 kb on - strand, within IAI46_06920at 1467.643 kb on - strand, within IAI46_06920at 1467.694 kb on - strand, within IAI46_06920at 1467.711 kb on + strand, within IAI46_06920at 1467.721 kb on + strand, within IAI46_06920at 1467.721 kb on + strand, within IAI46_06920at 1467.739 kb on - strand, within IAI46_06920at 1467.739 kb on - strand, within IAI46_06920at 1467.880 kb on + strand, within IAI46_06925at 1467.928 kb on + strand, within IAI46_06925at 1468.039 kb on - strandat 1468.039 kb on - strandat 1468.042 kb on - strandat 1468.043 kb on + strandat 1468.055 kb on - strandat 1468.138 kb on + strandat 1468.181 kb on + strandat 1468.198 kb on - strandat 1468.356 kb on - strand, within IAI46_06930at 1468.406 kb on - strand, within IAI46_06930at 1468.662 kb on + strand, within IAI46_06930at 1468.739 kb on - strand, within IAI46_06930

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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1,466,067 + IAI46_06915 0.51 +0.8
1,466,068 - IAI46_06915 0.51 -0.3
1,466,224 - IAI46_06915 0.60 +0.1
1,466,296 + IAI46_06915 0.65 +0.6
1,466,398 - IAI46_06915 0.70 +0.1
1,466,398 - IAI46_06915 0.70 -0.8
1,466,539 + IAI46_06915 0.79 +0.0
1,466,540 - IAI46_06915 0.79 +0.8
1,466,611 + IAI46_06915 0.83 +0.3
1,466,612 - IAI46_06915 0.83 +0.0
1,466,620 + IAI46_06915 0.83 +1.5
1,466,621 - IAI46_06915 0.83 +0.9
1,466,632 - IAI46_06915 0.84 +1.6
1,466,632 - IAI46_06915 0.84 +0.3
1,466,632 - IAI46_06915 0.84 -0.0
1,466,864 - +0.4
1,467,030 - +1.2
1,467,030 - +0.5
1,467,213 + IAI46_06920 0.24 -0.1
1,467,314 + IAI46_06920 0.36 -1.4
1,467,327 + IAI46_06920 0.38 -0.5
1,467,328 - IAI46_06920 0.38 -0.9
1,467,428 + IAI46_06920 0.51 +0.5
1,467,428 + IAI46_06920 0.51 -0.5
1,467,429 - IAI46_06920 0.51 -0.3
1,467,429 - IAI46_06920 0.51 +1.6
1,467,435 + IAI46_06920 0.52 -0.8
1,467,501 + IAI46_06920 0.60 -1.2
1,467,501 + IAI46_06920 0.60 +0.4
1,467,502 - IAI46_06920 0.60 +0.4
1,467,503 + IAI46_06920 0.60 -2.0
1,467,523 - IAI46_06920 0.63 -0.1
1,467,523 - IAI46_06920 0.63 -0.8
1,467,557 - IAI46_06920 0.67 -0.2
1,467,607 - IAI46_06920 0.73 -1.1
1,467,643 - IAI46_06920 0.78 -0.2
1,467,694 - IAI46_06920 0.84 -0.6
1,467,711 + IAI46_06920 0.86 +0.8
1,467,721 + IAI46_06920 0.88 -0.7
1,467,721 + IAI46_06920 0.88 -0.6
1,467,739 - IAI46_06920 0.90 -0.4
1,467,739 - IAI46_06920 0.90 -0.4
1,467,880 + IAI46_06925 0.31 +0.4
1,467,928 + IAI46_06925 0.55 -0.6
1,468,039 - -0.3
1,468,039 - -0.6
1,468,042 - +0.8
1,468,043 + +0.6
1,468,055 - +0.9
1,468,138 + +1.1
1,468,181 + +1.6
1,468,198 - +1.0
1,468,356 - IAI46_06930 0.15 +0.6
1,468,406 - IAI46_06930 0.20 +0.2
1,468,662 + IAI46_06930 0.43 -0.5
1,468,739 - IAI46_06930 0.50 +0.2

Or see this region's nucleotide sequence