Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_06265 and IAI46_06270 are separated by 16 nucleotides IAI46_06270 and IAI46_06275 are separated by 261 nucleotides IAI46_06275 and IAI46_06280 are separated by 11 nucleotides
IAI46_06265: IAI46_06265 - succinate dehydrogenase flavoprotein subunit, at 1,339,586 to 1,341,352
_06265
IAI46_06270: IAI46_06270 - succinate dehydrogenase iron-sulfur subunit, at 1,341,369 to 1,342,085
_06270
IAI46_06275: IAI46_06275 - 2-oxoglutarate dehydrogenase E1 component, at 1,342,347 to 1,345,160
_06275
IAI46_06280: IAI46_06280 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,345,172 to 1,346,386
_06280
Position (kb)
1342
1343
1344
1345
1346 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1341.347 kb on + strand at 1341.350 kb on + strand at 1341.350 kb on + strand at 1341.351 kb on - strand at 1341.436 kb on - strand at 1341.509 kb on + strand, within IAI46_06270 at 1341.509 kb on + strand, within IAI46_06270 at 1341.509 kb on + strand, within IAI46_06270 at 1341.726 kb on + strand, within IAI46_06270 at 1341.726 kb on + strand, within IAI46_06270 at 1341.808 kb on - strand, within IAI46_06270 at 1341.958 kb on + strand, within IAI46_06270 at 1341.995 kb on + strand, within IAI46_06270 at 1342.012 kb on + strand, within IAI46_06270 at 1342.012 kb on + strand, within IAI46_06270 at 1342.013 kb on - strand, within IAI46_06270 at 1342.019 kb on + strand at 1342.019 kb on + strand at 1342.020 kb on - strand at 1342.171 kb on - strand at 1342.211 kb on + strand at 1342.295 kb on + strand at 1342.295 kb on + strand at 1342.621 kb on + strand at 1342.860 kb on + strand, within IAI46_06275 at 1344.153 kb on + strand, within IAI46_06275 at 1344.267 kb on + strand, within IAI46_06275 at 1344.561 kb on + strand, within IAI46_06275 at 1344.939 kb on + strand at 1345.102 kb on + strand at 1345.145 kb on + strand at 1345.145 kb on + strand at 1345.955 kb on + strand, within IAI46_06280 at 1345.964 kb on + strand, within IAI46_06280
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 1,341,347 + -0.7 1,341,350 + -0.5 1,341,350 + +0.2 1,341,351 - -0.5 1,341,436 - +1.5 1,341,509 + IAI46_06270 0.20 +0.5 1,341,509 + IAI46_06270 0.20 -0.2 1,341,509 + IAI46_06270 0.20 +0.2 1,341,726 + IAI46_06270 0.50 +2.0 1,341,726 + IAI46_06270 0.50 +0.7 1,341,808 - IAI46_06270 0.61 +1.0 1,341,958 + IAI46_06270 0.82 -0.3 1,341,995 + IAI46_06270 0.87 -0.5 1,342,012 + IAI46_06270 0.90 -1.4 1,342,012 + IAI46_06270 0.90 +0.0 1,342,013 - IAI46_06270 0.90 +0.5 1,342,019 + +0.3 1,342,019 + +1.4 1,342,020 - +0.2 1,342,171 - -0.3 1,342,211 + +0.6 1,342,295 + -0.8 1,342,295 + -0.3 1,342,621 + -0.3 1,342,860 + IAI46_06275 0.18 +0.6 1,344,153 + IAI46_06275 0.64 -0.1 1,344,267 + IAI46_06275 0.68 -0.8 1,344,561 + IAI46_06275 0.79 -2.2 1,344,939 + -1.1 1,345,102 + -0.5 1,345,145 + -0.8 1,345,145 + +0.6 1,345,955 + IAI46_06280 0.64 +2.3 1,345,964 + IAI46_06280 0.65 -0.5
Or see this region's nucleotide sequence