Strain Fitness in Serratia liquefaciens MT49 around IAI46_06275

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06265 and IAI46_06270 are separated by 16 nucleotidesIAI46_06270 and IAI46_06275 are separated by 261 nucleotidesIAI46_06275 and IAI46_06280 are separated by 11 nucleotides IAI46_06265: IAI46_06265 - succinate dehydrogenase flavoprotein subunit, at 1,339,586 to 1,341,352 _06265 IAI46_06270: IAI46_06270 - succinate dehydrogenase iron-sulfur subunit, at 1,341,369 to 1,342,085 _06270 IAI46_06275: IAI46_06275 - 2-oxoglutarate dehydrogenase E1 component, at 1,342,347 to 1,345,160 _06275 IAI46_06280: IAI46_06280 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,345,172 to 1,346,386 _06280 Position (kb) 1342 1343 1344 1345 1346Strain fitness (log2 ratio) -2 -1 0 1 2at 1341.347 kb on + strandat 1341.350 kb on + strandat 1341.350 kb on + strandat 1341.351 kb on - strandat 1341.436 kb on - strandat 1341.509 kb on + strand, within IAI46_06270at 1341.509 kb on + strand, within IAI46_06270at 1341.509 kb on + strand, within IAI46_06270at 1341.726 kb on + strand, within IAI46_06270at 1341.726 kb on + strand, within IAI46_06270at 1341.808 kb on - strand, within IAI46_06270at 1341.958 kb on + strand, within IAI46_06270at 1341.995 kb on + strand, within IAI46_06270at 1342.012 kb on + strand, within IAI46_06270at 1342.012 kb on + strand, within IAI46_06270at 1342.013 kb on - strand, within IAI46_06270at 1342.019 kb on + strandat 1342.019 kb on + strandat 1342.020 kb on - strandat 1342.171 kb on - strandat 1342.211 kb on + strandat 1342.295 kb on + strandat 1342.295 kb on + strandat 1342.621 kb on + strandat 1342.860 kb on + strand, within IAI46_06275at 1344.153 kb on + strand, within IAI46_06275at 1344.267 kb on + strand, within IAI46_06275at 1344.561 kb on + strand, within IAI46_06275at 1344.939 kb on + strandat 1345.102 kb on + strandat 1345.145 kb on + strandat 1345.145 kb on + strandat 1345.955 kb on + strand, within IAI46_06280at 1345.964 kb on + strand, within IAI46_06280

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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1,341,347 + -0.7
1,341,350 + -0.5
1,341,350 + +0.2
1,341,351 - -0.5
1,341,436 - +1.5
1,341,509 + IAI46_06270 0.20 +0.5
1,341,509 + IAI46_06270 0.20 -0.2
1,341,509 + IAI46_06270 0.20 +0.2
1,341,726 + IAI46_06270 0.50 +2.0
1,341,726 + IAI46_06270 0.50 +0.7
1,341,808 - IAI46_06270 0.61 +1.0
1,341,958 + IAI46_06270 0.82 -0.3
1,341,995 + IAI46_06270 0.87 -0.5
1,342,012 + IAI46_06270 0.90 -1.4
1,342,012 + IAI46_06270 0.90 +0.0
1,342,013 - IAI46_06270 0.90 +0.5
1,342,019 + +0.3
1,342,019 + +1.4
1,342,020 - +0.2
1,342,171 - -0.3
1,342,211 + +0.6
1,342,295 + -0.8
1,342,295 + -0.3
1,342,621 + -0.3
1,342,860 + IAI46_06275 0.18 +0.6
1,344,153 + IAI46_06275 0.64 -0.1
1,344,267 + IAI46_06275 0.68 -0.8
1,344,561 + IAI46_06275 0.79 -2.2
1,344,939 + -1.1
1,345,102 + -0.5
1,345,145 + -0.8
1,345,145 + +0.6
1,345,955 + IAI46_06280 0.64 +2.3
1,345,964 + IAI46_06280 0.65 -0.5

Or see this region's nucleotide sequence