Strain Fitness in Serratia liquefaciens MT49 around IAI46_06170

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06165 and IAI46_06170 are separated by 200 nucleotidesIAI46_06170 and IAI46_06175 are separated by 19 nucleotides IAI46_06165: IAI46_06165 - two-component system sensor histidine kinase KdbD, at 1,318,285 to 1,320,978 _06165 IAI46_06170: IAI46_06170 - potassium-transporting ATPase subunit KdpC, at 1,321,179 to 1,321,748 _06170 IAI46_06175: IAI46_06175 - potassium-transporting ATPase subunit KdpB, at 1,321,768 to 1,323,837 _06175 Position (kb) 1321 1322Strain fitness (log2 ratio) -1 0 1at 1320.198 kb on + strand, within IAI46_06165at 1320.198 kb on + strand, within IAI46_06165at 1320.199 kb on - strand, within IAI46_06165at 1320.238 kb on + strand, within IAI46_06165at 1320.238 kb on + strand, within IAI46_06165at 1320.239 kb on - strand, within IAI46_06165at 1320.258 kb on + strand, within IAI46_06165at 1320.386 kb on + strand, within IAI46_06165at 1320.387 kb on - strand, within IAI46_06165at 1320.404 kb on - strand, within IAI46_06165at 1320.491 kb on - strand, within IAI46_06165at 1320.626 kb on + strand, within IAI46_06165at 1320.626 kb on + strand, within IAI46_06165at 1320.633 kb on + strand, within IAI46_06165at 1320.709 kb on + strandat 1320.709 kb on + strandat 1320.710 kb on - strandat 1320.861 kb on - strandat 1320.861 kb on - strandat 1321.059 kb on - strandat 1321.097 kb on + strandat 1321.122 kb on + strandat 1321.124 kb on + strandat 1321.124 kb on + strandat 1321.124 kb on + strandat 1321.124 kb on + strandat 1321.124 kb on + strandat 1321.126 kb on + strandat 1321.126 kb on + strandat 1321.126 kb on + strandat 1321.126 kb on + strandat 1321.126 kb on + strandat 1321.126 kb on + strandat 1321.154 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.156 kb on + strandat 1321.157 kb on - strandat 1321.157 kb on - strandat 1321.157 kb on - strandat 1321.157 kb on - strandat 1321.158 kb on + strandat 1321.158 kb on + strandat 1321.159 kb on - strandat 1321.159 kb on - strandat 1321.159 kb on - strandat 1321.299 kb on + strand, within IAI46_06170at 1321.464 kb on - strand, within IAI46_06170at 1321.517 kb on + strand, within IAI46_06170at 1321.517 kb on + strand, within IAI46_06170at 1321.519 kb on + strand, within IAI46_06170at 1321.519 kb on + strand, within IAI46_06170at 1321.520 kb on - strand, within IAI46_06170at 1321.618 kb on + strand, within IAI46_06170at 1321.737 kb on + strandat 1321.737 kb on + strandat 1321.738 kb on - strandat 1321.738 kb on - strandat 1321.741 kb on + strandat 1321.851 kb on - strandat 1321.898 kb on + strandat 1321.899 kb on - strandat 1321.899 kb on - strandat 1321.899 kb on - strandat 1321.933 kb on + strandat 1321.968 kb on + strandat 1321.969 kb on - strandat 1321.969 kb on - strandat 1322.013 kb on + strand, within IAI46_06175at 1322.013 kb on + strand, within IAI46_06175at 1322.025 kb on - strand, within IAI46_06175at 1322.061 kb on - strand, within IAI46_06175at 1322.061 kb on - strand, within IAI46_06175at 1322.205 kb on + strand, within IAI46_06175at 1322.304 kb on - strand, within IAI46_06175at 1322.400 kb on + strand, within IAI46_06175at 1322.401 kb on - strand, within IAI46_06175at 1322.436 kb on + strand, within IAI46_06175at 1322.491 kb on + strand, within IAI46_06175

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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1,320,198 + IAI46_06165 0.71 -0.8
1,320,198 + IAI46_06165 0.71 +1.5
1,320,199 - IAI46_06165 0.71 -0.2
1,320,238 + IAI46_06165 0.72 +0.1
1,320,238 + IAI46_06165 0.72 -0.2
1,320,239 - IAI46_06165 0.73 -0.3
1,320,258 + IAI46_06165 0.73 -1.6
1,320,386 + IAI46_06165 0.78 +0.5
1,320,387 - IAI46_06165 0.78 +0.6
1,320,404 - IAI46_06165 0.79 +1.1
1,320,491 - IAI46_06165 0.82 -0.4
1,320,626 + IAI46_06165 0.87 +0.2
1,320,626 + IAI46_06165 0.87 +0.1
1,320,633 + IAI46_06165 0.87 +1.3
1,320,709 + -1.3
1,320,709 + +0.2
1,320,710 - +0.3
1,320,861 - -0.6
1,320,861 - +1.1
1,321,059 - -0.8
1,321,097 + +0.2
1,321,122 + +0.3
1,321,124 + -0.1
1,321,124 + +0.1
1,321,124 + -0.1
1,321,124 + +0.1
1,321,124 + -0.3
1,321,126 + +0.3
1,321,126 + -1.4
1,321,126 + -0.3
1,321,126 + -0.7
1,321,126 + -0.6
1,321,126 + -0.9
1,321,154 + -0.9
1,321,156 + -1.0
1,321,156 + -0.5
1,321,156 + +0.2
1,321,156 + +0.8
1,321,156 + +1.1
1,321,156 + +1.1
1,321,156 + +0.1
1,321,156 + +1.1
1,321,156 + -1.3
1,321,157 - +0.1
1,321,157 - +0.7
1,321,157 - +0.1
1,321,157 - +0.7
1,321,158 + +0.8
1,321,158 + -0.1
1,321,159 - +0.5
1,321,159 - -0.6
1,321,159 - -0.0
1,321,299 + IAI46_06170 0.21 +0.3
1,321,464 - IAI46_06170 0.50 -0.1
1,321,517 + IAI46_06170 0.59 +0.3
1,321,517 + IAI46_06170 0.59 +0.7
1,321,519 + IAI46_06170 0.60 -0.6
1,321,519 + IAI46_06170 0.60 -0.9
1,321,520 - IAI46_06170 0.60 +0.8
1,321,618 + IAI46_06170 0.77 -0.0
1,321,737 + +0.7
1,321,737 + -1.3
1,321,738 - -0.9
1,321,738 - -0.6
1,321,741 + -0.6
1,321,851 - +1.1
1,321,898 + -0.2
1,321,899 - +1.5
1,321,899 - +0.6
1,321,899 - +0.5
1,321,933 + -0.6
1,321,968 + -1.0
1,321,969 - -0.3
1,321,969 - -0.0
1,322,013 + IAI46_06175 0.12 +0.7
1,322,013 + IAI46_06175 0.12 -0.3
1,322,025 - IAI46_06175 0.12 +0.5
1,322,061 - IAI46_06175 0.14 -0.5
1,322,061 - IAI46_06175 0.14 +1.0
1,322,205 + IAI46_06175 0.21 +0.5
1,322,304 - IAI46_06175 0.26 -0.2
1,322,400 + IAI46_06175 0.31 +0.8
1,322,401 - IAI46_06175 0.31 +0.7
1,322,436 + IAI46_06175 0.32 +0.5
1,322,491 + IAI46_06175 0.35 -0.0

Or see this region's nucleotide sequence