Strain Fitness in Serratia liquefaciens MT49 around IAI46_04550

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04540 and IAI46_04545 are separated by 106 nucleotidesIAI46_04545 and IAI46_04550 are separated by 133 nucleotidesIAI46_04550 and IAI46_04555 are separated by 16 nucleotidesIAI46_04555 and IAI46_04560 are separated by 0 nucleotides IAI46_04540: IAI46_04540 - hypothetical protein, at 978,875 to 979,492 _04540 IAI46_04545: IAI46_04545 - transporter, at 979,599 to 980,288 _04545 IAI46_04550: IAI46_04550 - DeoR/GlpR transcriptional regulator, at 980,422 to 981,189 _04550 IAI46_04555: IAI46_04555 - VOC family protein, at 981,206 to 981,589 _04555 IAI46_04560: IAI46_04560 - LysR family transcriptional regulator, at 981,590 to 982,498 _04560 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1at 979.466 kb on + strandat 979.549 kb on - strandat 979.573 kb on + strandat 979.573 kb on + strandat 979.574 kb on - strandat 979.585 kb on - strandat 979.676 kb on + strand, within IAI46_04545at 979.677 kb on - strand, within IAI46_04545at 979.677 kb on - strand, within IAI46_04545at 979.720 kb on + strand, within IAI46_04545at 979.720 kb on + strand, within IAI46_04545at 979.720 kb on + strand, within IAI46_04545at 979.721 kb on - strand, within IAI46_04545at 979.721 kb on - strand, within IAI46_04545at 979.800 kb on - strand, within IAI46_04545at 979.800 kb on - strand, within IAI46_04545at 979.876 kb on - strand, within IAI46_04545at 979.991 kb on + strand, within IAI46_04545at 979.992 kb on - strand, within IAI46_04545at 979.997 kb on + strand, within IAI46_04545at 979.997 kb on + strand, within IAI46_04545at 980.076 kb on + strand, within IAI46_04545at 980.077 kb on - strand, within IAI46_04545at 980.263 kb on - strandat 980.267 kb on + strandat 980.267 kb on + strandat 980.268 kb on - strandat 980.268 kb on - strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.270 kb on - strandat 980.270 kb on - strandat 980.292 kb on + strandat 980.293 kb on - strandat 980.301 kb on - strandat 980.301 kb on - strandat 980.312 kb on - strandat 980.466 kb on + strandat 980.587 kb on + strand, within IAI46_04550at 980.588 kb on - strand, within IAI46_04550at 980.709 kb on + strand, within IAI46_04550at 980.731 kb on - strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.741 kb on - strand, within IAI46_04550at 980.950 kb on + strand, within IAI46_04550at 980.951 kb on - strand, within IAI46_04550at 981.041 kb on + strand, within IAI46_04550at 981.041 kb on + strand, within IAI46_04550at 981.042 kb on - strand, within IAI46_04550at 981.042 kb on - strand, within IAI46_04550at 981.067 kb on + strand, within IAI46_04550at 981.067 kb on + strand, within IAI46_04550at 981.068 kb on - strand, within IAI46_04550at 981.111 kb on - strand, within IAI46_04550at 981.173 kb on + strandat 981.178 kb on + strandat 981.179 kb on - strandat 981.179 kb on - strandat 981.214 kb on - strandat 981.242 kb on - strandat 981.242 kb on - strandat 981.272 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.300 kb on - strand, within IAI46_04555at 981.430 kb on + strand, within IAI46_04555at 981.430 kb on + strand, within IAI46_04555at 981.537 kb on - strand, within IAI46_04555at 981.580 kb on + strandat 981.746 kb on - strand, within IAI46_04560at 981.930 kb on + strand, within IAI46_04560at 981.931 kb on - strand, within IAI46_04560at 981.931 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 982.100 kb on + strand, within IAI46_04560at 982.101 kb on - strand, within IAI46_04560at 982.101 kb on - strand, within IAI46_04560at 982.154 kb on - strand, within IAI46_04560

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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979,466 + -0.1
979,549 - -0.5
979,573 + +0.8
979,573 + +0.9
979,574 - -1.1
979,585 - +0.2
979,676 + IAI46_04545 0.11 -0.2
979,677 - IAI46_04545 0.11 -0.6
979,677 - IAI46_04545 0.11 -0.0
979,720 + IAI46_04545 0.18 +1.0
979,720 + IAI46_04545 0.18 +1.3
979,720 + IAI46_04545 0.18 +0.1
979,721 - IAI46_04545 0.18 -1.8
979,721 - IAI46_04545 0.18 +0.3
979,800 - IAI46_04545 0.29 +0.4
979,800 - IAI46_04545 0.29 +0.3
979,876 - IAI46_04545 0.40 +0.4
979,991 + IAI46_04545 0.57 -0.2
979,992 - IAI46_04545 0.57 +0.1
979,997 + IAI46_04545 0.58 -0.2
979,997 + IAI46_04545 0.58 -1.0
980,076 + IAI46_04545 0.69 +0.0
980,077 - IAI46_04545 0.69 +0.6
980,263 - +0.3
980,267 + -0.5
980,267 + +0.5
980,268 - +0.1
980,268 - -1.2
980,269 + +0.9
980,269 + +0.2
980,269 + +0.1
980,269 + -0.9
980,270 - -1.3
980,270 - +0.2
980,292 + -1.3
980,293 - -0.2
980,301 - +0.3
980,301 - +0.4
980,312 - -0.2
980,466 + -1.3
980,587 + IAI46_04550 0.21 -0.7
980,588 - IAI46_04550 0.22 -0.1
980,709 + IAI46_04550 0.37 -0.0
980,731 - IAI46_04550 0.40 +0.8
980,740 + IAI46_04550 0.41 +0.3
980,740 + IAI46_04550 0.41 +0.0
980,740 + IAI46_04550 0.41 -1.5
980,741 - IAI46_04550 0.42 -0.1
980,950 + IAI46_04550 0.69 -1.5
980,951 - IAI46_04550 0.69 +0.6
981,041 + IAI46_04550 0.81 +0.4
981,041 + IAI46_04550 0.81 -0.2
981,042 - IAI46_04550 0.81 +0.9
981,042 - IAI46_04550 0.81 +0.2
981,067 + IAI46_04550 0.84 +0.3
981,067 + IAI46_04550 0.84 -0.9
981,068 - IAI46_04550 0.84 -0.0
981,111 - IAI46_04550 0.90 -0.3
981,173 + +0.4
981,178 + +0.2
981,179 - +0.3
981,179 - -0.1
981,214 - -0.2
981,242 - +0.1
981,242 - -1.1
981,272 + IAI46_04555 0.17 +0.2
981,299 + IAI46_04555 0.24 +0.6
981,299 + IAI46_04555 0.24 -0.1
981,299 + IAI46_04555 0.24 -0.6
981,299 + IAI46_04555 0.24 -0.5
981,299 + IAI46_04555 0.24 -0.3
981,299 + IAI46_04555 0.24 -0.9
981,300 - IAI46_04555 0.24 -0.5
981,430 + IAI46_04555 0.58 +1.2
981,430 + IAI46_04555 0.58 -0.6
981,537 - IAI46_04555 0.86 -0.5
981,580 + +0.5
981,746 - IAI46_04560 0.17 +0.1
981,930 + IAI46_04560 0.37 -1.8
981,931 - IAI46_04560 0.38 +0.2
981,931 - IAI46_04560 0.38 -0.1
981,935 - IAI46_04560 0.38 -1.3
981,935 - IAI46_04560 0.38 +0.3
981,935 - IAI46_04560 0.38 +0.4
982,100 + IAI46_04560 0.56 +0.8
982,101 - IAI46_04560 0.56 +0.1
982,101 - IAI46_04560 0.56 -0.3
982,154 - IAI46_04560 0.62 -1.0

Or see this region's nucleotide sequence