Strain Fitness in Serratia liquefaciens MT49 around IAI46_04475

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04470 and IAI46_04475 are separated by 506 nucleotidesIAI46_04475 and IAI46_04480 are separated by 154 nucleotides IAI46_04470: IAI46_04470 - glutamate racemase, at 959,138 to 960,739 _04470 IAI46_04475: IAI46_04475 - TonB-dependent receptor, at 961,246 to 963,369 _04475 IAI46_04480: IAI46_04480 - condensation protein, at 963,524 to 966,460 _04480 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 960.340 kb on + strand, within IAI46_04470at 960.341 kb on - strand, within IAI46_04470at 960.341 kb on - strand, within IAI46_04470at 960.406 kb on + strand, within IAI46_04470at 960.406 kb on + strand, within IAI46_04470at 960.407 kb on - strand, within IAI46_04470at 960.577 kb on + strand, within IAI46_04470at 960.577 kb on + strand, within IAI46_04470at 960.578 kb on - strand, within IAI46_04470at 960.591 kb on + strandat 960.592 kb on - strandat 960.592 kb on - strandat 960.644 kb on - strandat 960.644 kb on - strandat 960.654 kb on + strandat 960.655 kb on - strandat 960.701 kb on + strandat 960.702 kb on - strandat 960.773 kb on + strandat 960.906 kb on - strandat 961.058 kb on + strandat 961.096 kb on + strandat 961.136 kb on + strandat 961.136 kb on + strandat 961.136 kb on + strandat 961.137 kb on - strandat 961.137 kb on - strandat 961.190 kb on - strandat 961.193 kb on + strandat 961.194 kb on - strandat 961.194 kb on - strandat 961.239 kb on + strandat 961.240 kb on - strandat 961.240 kb on - strandat 961.245 kb on + strandat 961.245 kb on + strandat 961.245 kb on + strandat 961.245 kb on + strandat 961.246 kb on - strandat 961.246 kb on - strandat 961.355 kb on + strandat 961.355 kb on + strandat 961.355 kb on + strandat 961.422 kb on + strandat 961.423 kb on - strandat 961.428 kb on + strandat 961.537 kb on - strand, within IAI46_04475at 961.672 kb on - strand, within IAI46_04475at 961.723 kb on + strand, within IAI46_04475at 961.723 kb on + strand, within IAI46_04475at 961.739 kb on - strand, within IAI46_04475at 961.798 kb on + strand, within IAI46_04475at 961.798 kb on + strand, within IAI46_04475at 961.798 kb on + strand, within IAI46_04475at 961.798 kb on + strand, within IAI46_04475at 961.799 kb on - strand, within IAI46_04475at 961.799 kb on - strand, within IAI46_04475at 961.799 kb on - strand, within IAI46_04475at 961.801 kb on - strand, within IAI46_04475at 961.801 kb on - strand, within IAI46_04475at 962.011 kb on + strand, within IAI46_04475at 962.011 kb on + strand, within IAI46_04475at 962.012 kb on - strand, within IAI46_04475at 962.208 kb on + strand, within IAI46_04475at 962.283 kb on + strand, within IAI46_04475at 962.283 kb on + strand, within IAI46_04475at 962.284 kb on - strand, within IAI46_04475at 962.287 kb on + strand, within IAI46_04475at 962.301 kb on + strand, within IAI46_04475at 962.301 kb on + strand, within IAI46_04475at 962.301 kb on + strand, within IAI46_04475at 962.302 kb on - strand, within IAI46_04475at 962.305 kb on - strand, within IAI46_04475at 962.305 kb on - strand, within IAI46_04475at 962.314 kb on - strand, within IAI46_04475at 962.320 kb on + strand, within IAI46_04475at 962.320 kb on + strand, within IAI46_04475at 962.321 kb on - strand, within IAI46_04475at 962.426 kb on - strand, within IAI46_04475at 962.484 kb on + strand, within IAI46_04475at 962.521 kb on + strand, within IAI46_04475at 962.521 kb on + strand, within IAI46_04475at 962.636 kb on + strand, within IAI46_04475at 962.636 kb on + strand, within IAI46_04475at 962.710 kb on + strand, within IAI46_04475at 962.758 kb on + strand, within IAI46_04475at 962.759 kb on - strand, within IAI46_04475at 962.759 kb on - strand, within IAI46_04475at 962.765 kb on - strand, within IAI46_04475at 962.776 kb on + strand, within IAI46_04475at 962.777 kb on - strand, within IAI46_04475at 962.788 kb on + strand, within IAI46_04475at 962.789 kb on - strand, within IAI46_04475at 962.797 kb on + strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.851 kb on + strand, within IAI46_04475at 962.860 kb on + strand, within IAI46_04475at 962.860 kb on + strand, within IAI46_04475at 962.860 kb on + strand, within IAI46_04475at 962.927 kb on + strand, within IAI46_04475at 962.928 kb on - strand, within IAI46_04475at 962.928 kb on - strand, within IAI46_04475at 962.935 kb on + strand, within IAI46_04475at 963.041 kb on + strand, within IAI46_04475at 963.074 kb on - strand, within IAI46_04475at 963.075 kb on + strand, within IAI46_04475at 963.076 kb on - strand, within IAI46_04475at 963.097 kb on + strand, within IAI46_04475at 963.097 kb on + strand, within IAI46_04475at 963.098 kb on - strand, within IAI46_04475at 963.098 kb on - strand, within IAI46_04475at 963.151 kb on + strand, within IAI46_04475at 963.152 kb on - strand, within IAI46_04475at 963.154 kb on + strand, within IAI46_04475at 963.164 kb on - strandat 963.196 kb on + strandat 963.210 kb on + strandat 963.223 kb on + strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.235 kb on + strandat 963.311 kb on - strandat 963.457 kb on - strandat 963.457 kb on - strandat 963.468 kb on + strandat 963.469 kb on - strandat 963.518 kb on - strandat 963.544 kb on + strandat 963.792 kb on - strandat 963.813 kb on + strandat 963.813 kb on + strandat 963.855 kb on + strand, within IAI46_04480at 963.855 kb on + strand, within IAI46_04480at 963.855 kb on + strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.886 kb on - strand, within IAI46_04480at 964.052 kb on + strand, within IAI46_04480at 964.052 kb on + strand, within IAI46_04480at 964.053 kb on - strand, within IAI46_04480at 964.053 kb on - strand, within IAI46_04480at 964.053 kb on - strand, within IAI46_04480at 964.054 kb on + strand, within IAI46_04480at 964.109 kb on - strand, within IAI46_04480at 964.109 kb on - strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.281 kb on + strand, within IAI46_04480

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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960,340 + IAI46_04470 0.75 -0.4
960,341 - IAI46_04470 0.75 +0.3
960,341 - IAI46_04470 0.75 -0.0
960,406 + IAI46_04470 0.79 -0.7
960,406 + IAI46_04470 0.79 -0.1
960,407 - IAI46_04470 0.79 +0.4
960,577 + IAI46_04470 0.90 +1.5
960,577 + IAI46_04470 0.90 +0.1
960,578 - IAI46_04470 0.90 +0.3
960,591 + -0.3
960,592 - +0.6
960,592 - -0.7
960,644 - -0.8
960,644 - -0.2
960,654 + +0.5
960,655 - -0.8
960,701 + +0.9
960,702 - -1.3
960,773 + +0.2
960,906 - -0.1
961,058 + +0.8
961,096 + -1.1
961,136 + -0.5
961,136 + -1.0
961,136 + -0.1
961,137 - -0.0
961,137 - -0.5
961,190 - +0.4
961,193 + +0.0
961,194 - -0.7
961,194 - -1.0
961,239 + -0.0
961,240 - -0.1
961,240 - -0.8
961,245 + +0.7
961,245 + +0.2
961,245 + +0.1
961,245 + +0.6
961,246 - -0.6
961,246 - -0.1
961,355 + -0.7
961,355 + -0.1
961,355 + -0.8
961,422 + -0.2
961,423 - -0.0
961,428 + +0.4
961,537 - IAI46_04475 0.14 -0.3
961,672 - IAI46_04475 0.20 +0.0
961,723 + IAI46_04475 0.22 +0.1
961,723 + IAI46_04475 0.22 -0.1
961,739 - IAI46_04475 0.23 -0.1
961,798 + IAI46_04475 0.26 +0.2
961,798 + IAI46_04475 0.26 +0.5
961,798 + IAI46_04475 0.26 -0.0
961,798 + IAI46_04475 0.26 +0.6
961,799 - IAI46_04475 0.26 +0.2
961,799 - IAI46_04475 0.26 +0.2
961,799 - IAI46_04475 0.26 -0.5
961,801 - IAI46_04475 0.26 +0.1
961,801 - IAI46_04475 0.26 +0.9
962,011 + IAI46_04475 0.36 +0.8
962,011 + IAI46_04475 0.36 +0.1
962,012 - IAI46_04475 0.36 +0.6
962,208 + IAI46_04475 0.45 -0.3
962,283 + IAI46_04475 0.49 -0.9
962,283 + IAI46_04475 0.49 +0.3
962,284 - IAI46_04475 0.49 +1.0
962,287 + IAI46_04475 0.49 +1.0
962,301 + IAI46_04475 0.50 -0.1
962,301 + IAI46_04475 0.50 +0.2
962,301 + IAI46_04475 0.50 +0.8
962,302 - IAI46_04475 0.50 -0.3
962,305 - IAI46_04475 0.50 +0.8
962,305 - IAI46_04475 0.50 -0.2
962,314 - IAI46_04475 0.50 +0.1
962,320 + IAI46_04475 0.51 -0.3
962,320 + IAI46_04475 0.51 -0.7
962,321 - IAI46_04475 0.51 +1.2
962,426 - IAI46_04475 0.56 +0.4
962,484 + IAI46_04475 0.58 +0.4
962,521 + IAI46_04475 0.60 +0.4
962,521 + IAI46_04475 0.60 +2.1
962,636 + IAI46_04475 0.65 -0.1
962,636 + IAI46_04475 0.65 -0.6
962,710 + IAI46_04475 0.69 +1.7
962,758 + IAI46_04475 0.71 +0.3
962,759 - IAI46_04475 0.71 +0.7
962,759 - IAI46_04475 0.71 +0.1
962,765 - IAI46_04475 0.72 +1.1
962,776 + IAI46_04475 0.72 -0.6
962,777 - IAI46_04475 0.72 +2.1
962,788 + IAI46_04475 0.73 +0.3
962,789 - IAI46_04475 0.73 -0.5
962,797 + IAI46_04475 0.73 +0.0
962,798 - IAI46_04475 0.73 -1.3
962,798 - IAI46_04475 0.73 -1.0
962,798 - IAI46_04475 0.73 +0.5
962,798 - IAI46_04475 0.73 -0.5
962,851 + IAI46_04475 0.76 -1.2
962,860 + IAI46_04475 0.76 +0.2
962,860 + IAI46_04475 0.76 -1.1
962,860 + IAI46_04475 0.76 -0.3
962,927 + IAI46_04475 0.79 -0.1
962,928 - IAI46_04475 0.79 +0.9
962,928 - IAI46_04475 0.79 -0.3
962,935 + IAI46_04475 0.80 -0.3
963,041 + IAI46_04475 0.85 -0.7
963,074 - IAI46_04475 0.86 -0.1
963,075 + IAI46_04475 0.86 -0.3
963,076 - IAI46_04475 0.86 +0.3
963,097 + IAI46_04475 0.87 -0.6
963,097 + IAI46_04475 0.87 -0.2
963,098 - IAI46_04475 0.87 -0.4
963,098 - IAI46_04475 0.87 -0.0
963,151 + IAI46_04475 0.90 -1.1
963,152 - IAI46_04475 0.90 -1.1
963,154 + IAI46_04475 0.90 +0.4
963,164 - +0.3
963,196 + +0.6
963,210 + +0.4
963,223 + +0.0
963,224 - +1.3
963,224 - -1.3
963,224 - -0.3
963,224 - -0.1
963,235 + -0.5
963,311 - -1.5
963,457 - -0.4
963,457 - -1.2
963,468 + -0.4
963,469 - -0.2
963,518 - +1.1
963,544 + +0.5
963,792 - -0.8
963,813 + -0.3
963,813 + +0.1
963,855 + IAI46_04480 0.11 +0.0
963,855 + IAI46_04480 0.11 +0.1
963,855 + IAI46_04480 0.11 -0.7
963,856 - IAI46_04480 0.11 +0.8
963,856 - IAI46_04480 0.11 -0.6
963,856 - IAI46_04480 0.11 -1.9
963,856 - IAI46_04480 0.11 -2.9
963,886 - IAI46_04480 0.12 -0.4
964,052 + IAI46_04480 0.18 +0.3
964,052 + IAI46_04480 0.18 +0.5
964,053 - IAI46_04480 0.18 -0.7
964,053 - IAI46_04480 0.18 -0.6
964,053 - IAI46_04480 0.18 -0.1
964,054 + IAI46_04480 0.18 -2.1
964,109 - IAI46_04480 0.20 -0.4
964,109 - IAI46_04480 0.20 -0.1
964,225 + IAI46_04480 0.24 -0.4
964,225 + IAI46_04480 0.24 -0.4
964,225 + IAI46_04480 0.24 +0.6
964,225 + IAI46_04480 0.24 -1.0
964,225 + IAI46_04480 0.24 -0.1
964,225 + IAI46_04480 0.24 -0.0
964,281 + IAI46_04480 0.26 +0.2

Or see this region's nucleotide sequence