Strain Fitness in Serratia liquefaciens MT49 around IAI46_03960

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03955 and IAI46_03960 are separated by 6 nucleotidesIAI46_03960 and IAI46_03965 are separated by 40 nucleotides IAI46_03955: IAI46_03955 - 3-deoxy-7-phosphoheptulonate synthase, at 855,854 to 856,927 _03955 IAI46_03960: IAI46_03960 - bifunctional chorismate mutase/prephenate dehydrogenase, at 856,934 to 858,055 _03960 IAI46_03965: IAI46_03965 - bifunctional chorismate mutase/prephenate dehydratase, at 858,096 to 859,253 _03965 Position (kb) 856 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 856.042 kb on + strand, within IAI46_03955at 856.043 kb on - strand, within IAI46_03955at 856.118 kb on + strand, within IAI46_03955at 856.119 kb on - strand, within IAI46_03955at 856.121 kb on - strand, within IAI46_03955at 856.121 kb on - strand, within IAI46_03955at 856.136 kb on + strand, within IAI46_03955at 856.136 kb on + strand, within IAI46_03955at 856.181 kb on - strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.190 kb on + strand, within IAI46_03955at 856.262 kb on - strand, within IAI46_03955at 856.262 kb on - strand, within IAI46_03955at 856.404 kb on + strand, within IAI46_03955at 856.453 kb on + strand, within IAI46_03955at 856.453 kb on + strand, within IAI46_03955at 856.454 kb on - strand, within IAI46_03955at 856.490 kb on - strand, within IAI46_03955at 856.490 kb on - strand, within IAI46_03955at 856.491 kb on + strand, within IAI46_03955at 856.492 kb on - strand, within IAI46_03955at 856.565 kb on - strand, within IAI46_03955at 856.578 kb on - strand, within IAI46_03955at 856.647 kb on + strand, within IAI46_03955at 856.647 kb on + strand, within IAI46_03955at 856.647 kb on + strand, within IAI46_03955at 856.648 kb on - strand, within IAI46_03955at 856.648 kb on - strand, within IAI46_03955at 856.648 kb on - strand, within IAI46_03955at 856.772 kb on + strand, within IAI46_03955at 856.772 kb on + strand, within IAI46_03955at 856.772 kb on + strand, within IAI46_03955at 856.772 kb on + strand, within IAI46_03955at 856.773 kb on - strand, within IAI46_03955at 856.773 kb on - strand, within IAI46_03955at 856.773 kb on - strand, within IAI46_03955at 856.773 kb on - strand, within IAI46_03955at 856.810 kb on + strand, within IAI46_03955at 856.810 kb on + strand, within IAI46_03955at 856.811 kb on - strand, within IAI46_03955at 856.811 kb on - strand, within IAI46_03955at 856.844 kb on - strandat 856.844 kb on - strandat 856.844 kb on - strandat 856.844 kb on - strandat 856.846 kb on + strandat 856.846 kb on + strandat 856.858 kb on + strandat 856.859 kb on - strandat 856.879 kb on + strandat 856.879 kb on + strandat 856.879 kb on + strandat 856.925 kb on + strandat 856.925 kb on + strandat 856.926 kb on - strandat 856.928 kb on + strandat 856.928 kb on + strandat 856.928 kb on + strandat 856.929 kb on - strandat 856.929 kb on - strandat 856.929 kb on - strandat 856.929 kb on - strandat 856.933 kb on + strandat 856.933 kb on + strandat 857.041 kb on + strandat 857.066 kb on + strand, within IAI46_03960at 857.066 kb on + strand, within IAI46_03960at 857.066 kb on + strand, within IAI46_03960at 857.066 kb on + strand, within IAI46_03960at 857.066 kb on + strand, within IAI46_03960at 857.067 kb on - strand, within IAI46_03960at 857.180 kb on + strand, within IAI46_03960at 857.180 kb on + strand, within IAI46_03960at 857.181 kb on - strand, within IAI46_03960at 857.181 kb on - strand, within IAI46_03960at 857.214 kb on + strand, within IAI46_03960at 857.215 kb on - strand, within IAI46_03960at 857.344 kb on + strand, within IAI46_03960at 857.345 kb on - strand, within IAI46_03960at 857.386 kb on + strand, within IAI46_03960at 857.387 kb on - strand, within IAI46_03960at 857.441 kb on - strand, within IAI46_03960at 857.441 kb on - strand, within IAI46_03960at 857.545 kb on - strand, within IAI46_03960at 857.545 kb on - strand, within IAI46_03960at 857.573 kb on + strand, within IAI46_03960at 857.573 kb on + strand, within IAI46_03960at 857.574 kb on - strand, within IAI46_03960at 857.601 kb on - strand, within IAI46_03960at 857.651 kb on - strand, within IAI46_03960at 857.687 kb on - strand, within IAI46_03960at 857.720 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.854 kb on + strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.855 kb on - strand, within IAI46_03960at 857.892 kb on - strand, within IAI46_03960at 857.894 kb on + strand, within IAI46_03960at 857.894 kb on + strand, within IAI46_03960at 857.895 kb on - strand, within IAI46_03960at 857.895 kb on - strand, within IAI46_03960at 857.990 kb on + strandat 857.991 kb on - strandat 858.053 kb on + strandat 858.060 kb on - strandat 858.093 kb on + strandat 858.093 kb on + strandat 858.213 kb on - strand, within IAI46_03965at 858.412 kb on - strand, within IAI46_03965at 858.416 kb on + strand, within IAI46_03965at 858.425 kb on + strand, within IAI46_03965at 858.425 kb on + strand, within IAI46_03965at 858.453 kb on - strand, within IAI46_03965at 858.453 kb on - strand, within IAI46_03965at 858.476 kb on - strand, within IAI46_03965at 858.596 kb on + strand, within IAI46_03965at 858.596 kb on + strand, within IAI46_03965at 858.635 kb on + strand, within IAI46_03965at 858.636 kb on - strand, within IAI46_03965at 858.636 kb on - strand, within IAI46_03965at 858.636 kb on - strand, within IAI46_03965at 858.637 kb on + strand, within IAI46_03965at 858.637 kb on + strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.638 kb on - strand, within IAI46_03965at 858.639 kb on + strand, within IAI46_03965at 858.639 kb on + strand, within IAI46_03965at 858.640 kb on - strand, within IAI46_03965at 858.640 kb on - strand, within IAI46_03965at 858.696 kb on - strand, within IAI46_03965at 858.748 kb on + strand, within IAI46_03965at 858.749 kb on - strand, within IAI46_03965at 858.833 kb on + strand, within IAI46_03965at 858.834 kb on - strand, within IAI46_03965at 858.889 kb on + strand, within IAI46_03965at 858.913 kb on + strand, within IAI46_03965at 858.914 kb on - strand, within IAI46_03965at 858.914 kb on - strand, within IAI46_03965at 859.003 kb on - strand, within IAI46_03965at 859.017 kb on - strand, within IAI46_03965at 859.043 kb on - strand, within IAI46_03965

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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856,042 + IAI46_03955 0.18 +1.4
856,043 - IAI46_03955 0.18 -0.0
856,118 + IAI46_03955 0.25 -0.1
856,119 - IAI46_03955 0.25 +1.1
856,121 - IAI46_03955 0.25 +0.2
856,121 - IAI46_03955 0.25 +0.8
856,136 + IAI46_03955 0.26 -1.3
856,136 + IAI46_03955 0.26 -0.8
856,181 - IAI46_03955 0.30 -0.5
856,190 + IAI46_03955 0.31 -1.3
856,190 + IAI46_03955 0.31 -1.1
856,190 + IAI46_03955 0.31 +0.9
856,190 + IAI46_03955 0.31 +1.0
856,190 + IAI46_03955 0.31 +2.3
856,190 + IAI46_03955 0.31 +1.2
856,190 + IAI46_03955 0.31 -0.4
856,262 - IAI46_03955 0.38 -0.7
856,262 - IAI46_03955 0.38 +0.1
856,404 + IAI46_03955 0.51 -0.8
856,453 + IAI46_03955 0.56 -0.7
856,453 + IAI46_03955 0.56 -0.6
856,454 - IAI46_03955 0.56 -0.3
856,490 - IAI46_03955 0.59 -0.3
856,490 - IAI46_03955 0.59 +0.5
856,491 + IAI46_03955 0.59 -1.1
856,492 - IAI46_03955 0.59 +0.7
856,565 - IAI46_03955 0.66 -0.7
856,578 - IAI46_03955 0.67 +0.9
856,647 + IAI46_03955 0.74 +1.7
856,647 + IAI46_03955 0.74 +0.8
856,647 + IAI46_03955 0.74 -0.3
856,648 - IAI46_03955 0.74 -0.5
856,648 - IAI46_03955 0.74 +0.1
856,648 - IAI46_03955 0.74 -0.1
856,772 + IAI46_03955 0.85 -0.2
856,772 + IAI46_03955 0.85 -0.6
856,772 + IAI46_03955 0.85 +0.2
856,772 + IAI46_03955 0.85 +1.7
856,773 - IAI46_03955 0.86 -0.1
856,773 - IAI46_03955 0.86 +0.0
856,773 - IAI46_03955 0.86 -0.1
856,773 - IAI46_03955 0.86 -0.2
856,810 + IAI46_03955 0.89 -0.2
856,810 + IAI46_03955 0.89 +0.7
856,811 - IAI46_03955 0.89 -0.9
856,811 - IAI46_03955 0.89 -0.6
856,844 - -0.1
856,844 - -0.5
856,844 - -0.1
856,844 - +0.8
856,846 + +0.5
856,846 + +0.1
856,858 + -0.2
856,859 - -0.1
856,879 + +0.8
856,879 + -0.1
856,879 + -0.8
856,925 + +1.0
856,925 + +0.2
856,926 - -1.0
856,928 + +0.2
856,928 + -0.8
856,928 + -1.5
856,929 - -1.2
856,929 - +0.1
856,929 - +1.0
856,929 - +0.3
856,933 + -0.7
856,933 + -0.4
857,041 + -1.1
857,066 + IAI46_03960 0.12 -0.2
857,066 + IAI46_03960 0.12 +0.2
857,066 + IAI46_03960 0.12 -0.7
857,066 + IAI46_03960 0.12 +0.7
857,066 + IAI46_03960 0.12 -1.2
857,067 - IAI46_03960 0.12 +0.1
857,180 + IAI46_03960 0.22 +0.5
857,180 + IAI46_03960 0.22 +0.1
857,181 - IAI46_03960 0.22 +1.2
857,181 - IAI46_03960 0.22 +0.7
857,214 + IAI46_03960 0.25 +0.7
857,215 - IAI46_03960 0.25 +0.7
857,344 + IAI46_03960 0.37 +0.3
857,345 - IAI46_03960 0.37 +0.1
857,386 + IAI46_03960 0.40 +0.3
857,387 - IAI46_03960 0.40 +0.4
857,441 - IAI46_03960 0.45 +0.0
857,441 - IAI46_03960 0.45 -0.1
857,545 - IAI46_03960 0.54 -0.2
857,545 - IAI46_03960 0.54 +1.5
857,573 + IAI46_03960 0.57 -1.6
857,573 + IAI46_03960 0.57 -2.2
857,574 - IAI46_03960 0.57 -0.6
857,601 - IAI46_03960 0.59 +0.7
857,651 - IAI46_03960 0.64 -0.4
857,687 - IAI46_03960 0.67 +0.2
857,720 + IAI46_03960 0.70 -0.1
857,854 + IAI46_03960 0.82 +0.4
857,854 + IAI46_03960 0.82 +0.3
857,854 + IAI46_03960 0.82 +1.0
857,854 + IAI46_03960 0.82 +0.5
857,854 + IAI46_03960 0.82 +0.3
857,854 + IAI46_03960 0.82 +0.5
857,855 - IAI46_03960 0.82 -0.0
857,855 - IAI46_03960 0.82 -0.3
857,855 - IAI46_03960 0.82 -0.2
857,855 - IAI46_03960 0.82 +0.5
857,892 - IAI46_03960 0.85 -0.6
857,894 + IAI46_03960 0.86 -0.0
857,894 + IAI46_03960 0.86 +0.2
857,895 - IAI46_03960 0.86 +0.1
857,895 - IAI46_03960 0.86 +0.4
857,990 + -0.6
857,991 - -0.5
858,053 + +0.2
858,060 - -2.0
858,093 + -2.0
858,093 + +0.5
858,213 - IAI46_03965 0.10 -0.2
858,412 - IAI46_03965 0.27 -0.8
858,416 + IAI46_03965 0.28 -0.1
858,425 + IAI46_03965 0.28 -0.6
858,425 + IAI46_03965 0.28 -0.4
858,453 - IAI46_03965 0.31 +1.5
858,453 - IAI46_03965 0.31 +2.1
858,476 - IAI46_03965 0.33 +0.7
858,596 + IAI46_03965 0.43 +0.2
858,596 + IAI46_03965 0.43 -0.5
858,635 + IAI46_03965 0.47 +0.4
858,636 - IAI46_03965 0.47 -0.1
858,636 - IAI46_03965 0.47 -0.1
858,636 - IAI46_03965 0.47 -0.3
858,637 + IAI46_03965 0.47 +0.3
858,637 + IAI46_03965 0.47 +0.4
858,638 - IAI46_03965 0.47 -0.1
858,638 - IAI46_03965 0.47 -0.8
858,638 - IAI46_03965 0.47 +0.5
858,638 - IAI46_03965 0.47 -0.6
858,638 - IAI46_03965 0.47 +0.4
858,639 + IAI46_03965 0.47 -1.1
858,639 + IAI46_03965 0.47 +1.3
858,640 - IAI46_03965 0.47 -0.3
858,640 - IAI46_03965 0.47 -0.3
858,696 - IAI46_03965 0.52 -1.3
858,748 + IAI46_03965 0.56 -0.6
858,749 - IAI46_03965 0.56 +0.1
858,833 + IAI46_03965 0.64 +0.0
858,834 - IAI46_03965 0.64 -0.3
858,889 + IAI46_03965 0.68 +0.8
858,913 + IAI46_03965 0.71 +0.3
858,914 - IAI46_03965 0.71 -0.5
858,914 - IAI46_03965 0.71 +0.5
859,003 - IAI46_03965 0.78 +0.9
859,017 - IAI46_03965 0.80 -0.4
859,043 - IAI46_03965 0.82 -1.3

Or see this region's nucleotide sequence