Strain Fitness in Serratia liquefaciens MT49 around IAI46_03775

Experiment: No stress control, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03770 and IAI46_03775 are separated by 107 nucleotidesIAI46_03775 and IAI46_03780 overlap by 7 nucleotidesIAI46_03780 and IAI46_03785 are separated by 325 nucleotides IAI46_03770: IAI46_03770 - acyltransferase, at 819,644 to 820,924 _03770 IAI46_03775: IAI46_03775 - 5'/3'-nucleotidase SurE, at 821,032 to 821,793 _03775 IAI46_03780: IAI46_03780 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 821,787 to 822,413 _03780 IAI46_03785: IAI46_03785 - murein hydrolase activator NlpD, at 822,739 to 823,731 _03785 Position (kb) 821 822Strain fitness (log2 ratio) -1 0 1at 820.037 kb on + strand, within IAI46_03770at 820.038 kb on - strand, within IAI46_03770at 820.041 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.044 kb on - strand, within IAI46_03770at 820.084 kb on + strand, within IAI46_03770at 820.103 kb on - strand, within IAI46_03770at 820.175 kb on - strand, within IAI46_03770at 820.201 kb on - strand, within IAI46_03770at 820.242 kb on + strand, within IAI46_03770at 820.244 kb on + strand, within IAI46_03770at 820.245 kb on - strand, within IAI46_03770at 820.263 kb on - strand, within IAI46_03770at 820.283 kb on - strand, within IAI46_03770at 820.394 kb on - strand, within IAI46_03770at 820.430 kb on - strand, within IAI46_03770at 820.471 kb on - strand, within IAI46_03770at 820.471 kb on - strand, within IAI46_03770at 820.484 kb on + strand, within IAI46_03770at 820.502 kb on - strand, within IAI46_03770at 820.513 kb on - strand, within IAI46_03770at 820.516 kb on + strand, within IAI46_03770at 820.516 kb on + strand, within IAI46_03770at 820.517 kb on - strand, within IAI46_03770at 820.517 kb on - strand, within IAI46_03770at 820.517 kb on - strand, within IAI46_03770at 820.582 kb on - strand, within IAI46_03770at 820.595 kb on + strand, within IAI46_03770at 820.596 kb on - strand, within IAI46_03770at 820.612 kb on + strand, within IAI46_03770at 820.657 kb on + strand, within IAI46_03770at 820.657 kb on + strand, within IAI46_03770at 820.658 kb on - strand, within IAI46_03770at 820.666 kb on + strand, within IAI46_03770at 820.667 kb on - strand, within IAI46_03770at 820.731 kb on - strand, within IAI46_03770at 820.731 kb on - strand, within IAI46_03770at 820.735 kb on - strand, within IAI46_03770at 820.740 kb on - strand, within IAI46_03770at 820.746 kb on - strand, within IAI46_03770at 820.810 kb on + strandat 820.925 kb on - strandat 820.927 kb on + strandat 820.928 kb on - strandat 820.928 kb on - strandat 820.938 kb on + strandat 820.969 kb on + strandat 820.969 kb on + strandat 820.973 kb on + strandat 820.974 kb on - strandat 820.974 kb on - strandat 821.012 kb on + strandat 821.031 kb on + strandat 821.219 kb on + strand, within IAI46_03775at 821.219 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.249 kb on - strand, within IAI46_03775at 821.339 kb on - strand, within IAI46_03775at 821.422 kb on + strand, within IAI46_03775at 821.422 kb on + strand, within IAI46_03775at 821.423 kb on - strand, within IAI46_03775at 821.423 kb on - strand, within IAI46_03775at 821.502 kb on + strand, within IAI46_03775at 821.503 kb on - strand, within IAI46_03775at 821.534 kb on + strand, within IAI46_03775at 821.535 kb on - strand, within IAI46_03775at 821.681 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.704 kb on - strand, within IAI46_03775at 821.732 kb on - strandat 821.732 kb on - strandat 821.747 kb on + strandat 821.751 kb on - strandat 821.801 kb on + strandat 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.972 kb on + strand, within IAI46_03780at 821.972 kb on + strand, within IAI46_03780at 821.973 kb on - strand, within IAI46_03780at 821.973 kb on - strand, within IAI46_03780at 822.061 kb on + strand, within IAI46_03780at 822.101 kb on + strand, within IAI46_03780at 822.155 kb on + strand, within IAI46_03780at 822.155 kb on + strand, within IAI46_03780at 822.156 kb on - strand, within IAI46_03780at 822.156 kb on - strand, within IAI46_03780at 822.164 kb on + strand, within IAI46_03780at 822.221 kb on + strand, within IAI46_03780at 822.222 kb on - strand, within IAI46_03780at 822.329 kb on + strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.480 kb on - strandat 822.507 kb on - strandat 822.533 kb on + strandat 822.533 kb on + strandat 822.534 kb on - strandat 822.534 kb on - strandat 822.636 kb on + strandat 822.636 kb on + strandat 822.636 kb on + strandat 822.637 kb on - strandat 822.644 kb on + strandat 822.666 kb on + strandat 822.666 kb on + strandat 822.667 kb on - strandat 822.673 kb on + strandat 822.674 kb on - strandat 822.690 kb on - strandat 822.690 kb on - strandat 822.691 kb on + strandat 822.691 kb on + strandat 822.700 kb on + strandat 822.701 kb on - strandat 822.744 kb on + strandat 822.744 kb on + strandat 822.745 kb on - strandat 822.749 kb on + strandat 822.749 kb on + strandat 822.768 kb on + strandat 822.768 kb on + strandat 822.769 kb on - strandat 822.776 kb on + strandat 822.777 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
remove
820,037 + IAI46_03770 0.31 -0.2
820,038 - IAI46_03770 0.31 -0.4
820,041 + IAI46_03770 0.31 +1.0
820,043 + IAI46_03770 0.31 -0.8
820,043 + IAI46_03770 0.31 -0.5
820,043 + IAI46_03770 0.31 -0.3
820,044 - IAI46_03770 0.31 -0.2
820,084 + IAI46_03770 0.34 -0.3
820,103 - IAI46_03770 0.36 +0.1
820,175 - IAI46_03770 0.41 +0.0
820,201 - IAI46_03770 0.43 +0.1
820,242 + IAI46_03770 0.47 +0.0
820,244 + IAI46_03770 0.47 -0.5
820,245 - IAI46_03770 0.47 -0.9
820,263 - IAI46_03770 0.48 -0.0
820,283 - IAI46_03770 0.50 +0.3
820,394 - IAI46_03770 0.59 -1.2
820,430 - IAI46_03770 0.61 +0.4
820,471 - IAI46_03770 0.65 -0.2
820,471 - IAI46_03770 0.65 -0.9
820,484 + IAI46_03770 0.66 +0.1
820,502 - IAI46_03770 0.67 +1.5
820,513 - IAI46_03770 0.68 +0.3
820,516 + IAI46_03770 0.68 +1.5
820,516 + IAI46_03770 0.68 -0.0
820,517 - IAI46_03770 0.68 +0.8
820,517 - IAI46_03770 0.68 -0.0
820,517 - IAI46_03770 0.68 -0.3
820,582 - IAI46_03770 0.73 +0.0
820,595 + IAI46_03770 0.74 +0.4
820,596 - IAI46_03770 0.74 +1.1
820,612 + IAI46_03770 0.76 -0.5
820,657 + IAI46_03770 0.79 -0.2
820,657 + IAI46_03770 0.79 +0.1
820,658 - IAI46_03770 0.79 +0.2
820,666 + IAI46_03770 0.80 +0.2
820,667 - IAI46_03770 0.80 -0.1
820,731 - IAI46_03770 0.85 -0.2
820,731 - IAI46_03770 0.85 +0.5
820,735 - IAI46_03770 0.85 +0.6
820,740 - IAI46_03770 0.86 -0.2
820,746 - IAI46_03770 0.86 -0.6
820,810 + -0.4
820,925 - -0.1
820,927 + -0.7
820,928 - -0.6
820,928 - +0.5
820,938 + +0.2
820,969 + -0.3
820,969 + -0.7
820,973 + -0.3
820,974 - +0.5
820,974 - +1.0
821,012 + -0.4
821,031 + -0.5
821,219 + IAI46_03775 0.25 +0.4
821,219 + IAI46_03775 0.25 +0.4
821,246 + IAI46_03775 0.28 -0.3
821,246 + IAI46_03775 0.28 +0.3
821,246 + IAI46_03775 0.28 -0.3
821,249 - IAI46_03775 0.28 +0.1
821,339 - IAI46_03775 0.40 -0.9
821,422 + IAI46_03775 0.51 +0.3
821,422 + IAI46_03775 0.51 +0.3
821,423 - IAI46_03775 0.51 -0.0
821,423 - IAI46_03775 0.51 +0.4
821,502 + IAI46_03775 0.62 +0.6
821,503 - IAI46_03775 0.62 +1.4
821,534 + IAI46_03775 0.66 +1.5
821,535 - IAI46_03775 0.66 -0.6
821,681 + IAI46_03775 0.85 +0.1
821,692 + IAI46_03775 0.87 -0.7
821,692 + IAI46_03775 0.87 -0.9
821,692 + IAI46_03775 0.87 -0.7
821,692 + IAI46_03775 0.87 -0.1
821,693 - IAI46_03775 0.87 +0.3
821,693 - IAI46_03775 0.87 +0.1
821,693 - IAI46_03775 0.87 -1.1
821,693 - IAI46_03775 0.87 -0.2
821,693 - IAI46_03775 0.87 -0.0
821,704 - IAI46_03775 0.88 -1.0
821,732 - -0.5
821,732 - +0.1
821,747 + -0.0
821,751 - +0.1
821,801 + +0.3
821,970 + IAI46_03780 0.29 +0.2
821,970 + IAI46_03780 0.29 +0.2
821,970 + IAI46_03780 0.29 +0.8
821,970 + IAI46_03780 0.29 +0.4
821,970 + IAI46_03780 0.29 -0.1
821,971 - IAI46_03780 0.29 -0.2
821,971 - IAI46_03780 0.29 +0.1
821,971 - IAI46_03780 0.29 -1.0
821,971 - IAI46_03780 0.29 -0.5
821,971 - IAI46_03780 0.29 -0.3
821,972 + IAI46_03780 0.30 +0.6
821,972 + IAI46_03780 0.30 +0.7
821,973 - IAI46_03780 0.30 +0.4
821,973 - IAI46_03780 0.30 -1.3
822,061 + IAI46_03780 0.44 +0.7
822,101 + IAI46_03780 0.50 -0.2
822,155 + IAI46_03780 0.59 -1.3
822,155 + IAI46_03780 0.59 -0.6
822,156 - IAI46_03780 0.59 -0.3
822,156 - IAI46_03780 0.59 +0.7
822,164 + IAI46_03780 0.60 +0.4
822,221 + IAI46_03780 0.69 -0.8
822,222 - IAI46_03780 0.69 -0.1
822,329 + IAI46_03780 0.86 -0.3
822,330 - IAI46_03780 0.87 -0.0
822,330 - IAI46_03780 0.87 +0.9
822,330 - IAI46_03780 0.87 -1.0
822,480 - -0.3
822,507 - +0.0
822,533 + -0.1
822,533 + +0.2
822,534 - +0.4
822,534 - +0.3
822,636 + +0.7
822,636 + +0.2
822,636 + +0.2
822,637 - +1.2
822,644 + -0.7
822,666 + -0.3
822,666 + -0.1
822,667 - +0.4
822,673 + -0.9
822,674 - +0.5
822,690 - +0.1
822,690 - -0.3
822,691 + +0.4
822,691 + -0.2
822,700 + -1.7
822,701 - +0.7
822,744 + -1.5
822,744 + +0.0
822,745 - +0.5
822,749 + +0.6
822,749 + +0.4
822,768 + +0.4
822,768 + +0.3
822,769 - +0.4
822,776 + -0.1
822,777 - +0.1

Or see this region's nucleotide sequence