Strain Fitness in Serratia liquefaciens MT49 around IAI46_03345

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03335 and IAI46_03340 are separated by 134 nucleotidesIAI46_03340 and IAI46_03345 are separated by 9 nucleotidesIAI46_03345 and IAI46_03350 are separated by 1 nucleotides IAI46_03335: IAI46_03335 - DASS family sodium-coupled anion symporter, at 720,335 to 721,807 _03335 IAI46_03340: IAI46_03340 - 3-isopropylmalate dehydratase small subunit, at 721,942 to 722,544 _03340 IAI46_03345: IAI46_03345 - 3-isopropylmalate dehydratase large subunit, at 722,554 to 723,954 _03345 IAI46_03350: IAI46_03350 - 3-isopropylmalate dehydrogenase, at 723,956 to 725,047 _03350 Position (kb) 722 723 724Strain fitness (log2 ratio) -2 -1 0 1 2at 721.658 kb on + strand, within IAI46_03335at 721.659 kb on - strand, within IAI46_03335at 721.659 kb on - strand, within IAI46_03335at 721.698 kb on - strandat 721.767 kb on + strandat 721.767 kb on + strandat 721.768 kb on - strandat 721.818 kb on - strandat 721.847 kb on - strandat 721.865 kb on + strandat 721.866 kb on - strandat 721.873 kb on + strandat 721.874 kb on - strandat 721.890 kb on - strandat 721.890 kb on - strandat 721.890 kb on - strandat 721.893 kb on + strandat 721.920 kb on + strandat 721.921 kb on - strandat 721.929 kb on + strandat 721.929 kb on + strandat 721.929 kb on + strandat 721.930 kb on - strandat 721.974 kb on - strandat 721.984 kb on - strandat 722.217 kb on - strand, within IAI46_03340at 722.253 kb on + strand, within IAI46_03340at 722.523 kb on + strandat 722.523 kb on + strandat 722.523 kb on + strandat 722.523 kb on + strandat 722.524 kb on - strandat 722.524 kb on - strandat 722.532 kb on + strandat 722.533 kb on - strandat 722.556 kb on - strandat 722.562 kb on + strandat 722.631 kb on + strandat 722.632 kb on - strandat 722.632 kb on - strandat 722.632 kb on - strandat 722.842 kb on + strand, within IAI46_03345at 722.901 kb on + strand, within IAI46_03345at 722.902 kb on - strand, within IAI46_03345at 722.913 kb on + strand, within IAI46_03345at 722.914 kb on - strand, within IAI46_03345at 722.925 kb on + strand, within IAI46_03345at 722.979 kb on + strand, within IAI46_03345at 722.979 kb on + strand, within IAI46_03345at 722.980 kb on - strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.982 kb on - strand, within IAI46_03345at 722.982 kb on - strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.091 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.260 kb on - strand, within IAI46_03345at 723.420 kb on + strand, within IAI46_03345at 723.421 kb on - strand, within IAI46_03345at 723.421 kb on - strand, within IAI46_03345at 723.423 kb on + strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.520 kb on - strand, within IAI46_03345at 723.520 kb on - strand, within IAI46_03345at 723.632 kb on - strand, within IAI46_03345at 723.632 kb on - strand, within IAI46_03345at 723.632 kb on - strand, within IAI46_03345at 723.662 kb on + strand, within IAI46_03345at 723.663 kb on - strand, within IAI46_03345at 723.774 kb on + strand, within IAI46_03345at 723.775 kb on - strand, within IAI46_03345at 723.876 kb on + strandat 723.877 kb on - strandat 723.877 kb on - strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.878 kb on + strandat 723.879 kb on - strandat 723.880 kb on + strandat 723.880 kb on + strandat 723.881 kb on - strandat 723.881 kb on - strandat 723.909 kb on - strandat 723.926 kb on + strandat 723.927 kb on - strandat 723.938 kb on + strandat 723.939 kb on - strandat 723.940 kb on + strandat 723.940 kb on + strandat 723.940 kb on + strandat 723.940 kb on + strandat 723.941 kb on - strandat 723.941 kb on - strandat 723.941 kb on - strandat 723.941 kb on - strandat 723.957 kb on + strandat 723.958 kb on - strandat 723.958 kb on - strandat 723.958 kb on - strandat 723.971 kb on + strandat 723.972 kb on - strandat 724.021 kb on - strandat 724.211 kb on + strand, within IAI46_03350at 724.212 kb on - strand, within IAI46_03350at 724.373 kb on - strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.454 kb on + strand, within IAI46_03350at 724.466 kb on - strand, within IAI46_03350at 724.483 kb on + strand, within IAI46_03350at 724.483 kb on + strand, within IAI46_03350at 724.484 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.614 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.619 kb on - strand, within IAI46_03350at 724.648 kb on + strand, within IAI46_03350at 724.707 kb on + strand, within IAI46_03350at 724.820 kb on + strand, within IAI46_03350

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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721,658 + IAI46_03335 0.90 -0.8
721,659 - IAI46_03335 0.90 -0.3
721,659 - IAI46_03335 0.90 +0.7
721,698 - -0.1
721,767 + +0.0
721,767 + +0.3
721,768 - +0.2
721,818 - +0.1
721,847 - -0.9
721,865 + +1.1
721,866 - -0.4
721,873 + -0.1
721,874 - +0.2
721,890 - +0.1
721,890 - +0.4
721,890 - -0.4
721,893 + -0.7
721,920 + +0.5
721,921 - +1.2
721,929 + +0.8
721,929 + -0.4
721,929 + +0.2
721,930 - -1.6
721,974 - -0.4
721,984 - +0.9
722,217 - IAI46_03340 0.46 +0.6
722,253 + IAI46_03340 0.52 +0.3
722,523 + -0.1
722,523 + +0.2
722,523 + -0.2
722,523 + -0.5
722,524 - -1.0
722,524 - +0.2
722,532 + -0.6
722,533 - +1.4
722,556 - -0.7
722,562 + -0.4
722,631 + -0.6
722,632 - -0.2
722,632 - -0.2
722,632 - +0.0
722,842 + IAI46_03345 0.21 -2.0
722,901 + IAI46_03345 0.25 +0.4
722,902 - IAI46_03345 0.25 -0.0
722,913 + IAI46_03345 0.26 +0.1
722,914 - IAI46_03345 0.26 -0.3
722,925 + IAI46_03345 0.26 -0.9
722,979 + IAI46_03345 0.30 +1.0
722,979 + IAI46_03345 0.30 +0.3
722,980 - IAI46_03345 0.30 +0.2
722,981 + IAI46_03345 0.30 -0.3
722,981 + IAI46_03345 0.30 -0.2
722,981 + IAI46_03345 0.30 +0.1
722,982 - IAI46_03345 0.31 +0.6
722,982 - IAI46_03345 0.31 -0.3
723,090 + IAI46_03345 0.38 -0.3
723,090 + IAI46_03345 0.38 -0.1
723,090 + IAI46_03345 0.38 +0.7
723,091 - IAI46_03345 0.38 +0.3
723,128 - IAI46_03345 0.41 +0.8
723,128 - IAI46_03345 0.41 -0.3
723,128 - IAI46_03345 0.41 +0.4
723,128 - IAI46_03345 0.41 -1.0
723,260 - IAI46_03345 0.50 -0.8
723,420 + IAI46_03345 0.62 -0.6
723,421 - IAI46_03345 0.62 -0.8
723,421 - IAI46_03345 0.62 +2.2
723,423 + IAI46_03345 0.62 -0.2
723,424 - IAI46_03345 0.62 +0.0
723,424 - IAI46_03345 0.62 -0.6
723,424 - IAI46_03345 0.62 +0.5
723,424 - IAI46_03345 0.62 -0.6
723,424 - IAI46_03345 0.62 +0.3
723,520 - IAI46_03345 0.69 -0.1
723,520 - IAI46_03345 0.69 +0.3
723,632 - IAI46_03345 0.77 +0.6
723,632 - IAI46_03345 0.77 +0.5
723,632 - IAI46_03345 0.77 -1.0
723,662 + IAI46_03345 0.79 +0.3
723,663 - IAI46_03345 0.79 +0.5
723,774 + IAI46_03345 0.87 +1.2
723,775 - IAI46_03345 0.87 -0.0
723,876 + -0.6
723,877 - +0.8
723,877 - -0.3
723,878 + +0.2
723,878 + -0.5
723,878 + +0.2
723,878 + -0.1
723,878 + -0.2
723,879 - +1.1
723,880 + -0.0
723,880 + +0.5
723,881 - -1.6
723,881 - -1.6
723,909 - +0.1
723,926 + -0.2
723,927 - -0.2
723,938 + -0.2
723,939 - +0.2
723,940 + -1.3
723,940 + -0.8
723,940 + -0.1
723,940 + +0.4
723,941 - +0.5
723,941 - +0.4
723,941 - +0.1
723,941 - +0.4
723,957 + -0.5
723,958 - +1.0
723,958 - +0.6
723,958 - +0.7
723,971 + -1.8
723,972 - +0.7
724,021 - -0.3
724,211 + IAI46_03350 0.23 +2.5
724,212 - IAI46_03350 0.23 +0.7
724,373 - IAI46_03350 0.38 -0.2
724,374 + IAI46_03350 0.38 -0.5
724,374 + IAI46_03350 0.38 -0.6
724,374 + IAI46_03350 0.38 -0.4
724,374 + IAI46_03350 0.38 +0.7
724,374 + IAI46_03350 0.38 +0.1
724,374 + IAI46_03350 0.38 +0.3
724,374 + IAI46_03350 0.38 -0.9
724,374 + IAI46_03350 0.38 +0.5
724,374 + IAI46_03350 0.38 -0.3
724,374 + IAI46_03350 0.38 -1.0
724,374 + IAI46_03350 0.38 -1.5
724,374 + IAI46_03350 0.38 -0.5
724,374 + IAI46_03350 0.38 +0.7
724,375 - IAI46_03350 0.38 +0.5
724,375 - IAI46_03350 0.38 -0.6
724,375 - IAI46_03350 0.38 +0.7
724,375 - IAI46_03350 0.38 -0.4
724,375 - IAI46_03350 0.38 -2.3
724,375 - IAI46_03350 0.38 +0.2
724,375 - IAI46_03350 0.38 +0.1
724,375 - IAI46_03350 0.38 -0.3
724,375 - IAI46_03350 0.38 -0.6
724,375 - IAI46_03350 0.38 +0.8
724,375 - IAI46_03350 0.38 +0.8
724,375 - IAI46_03350 0.38 +0.1
724,378 + IAI46_03350 0.39 +0.4
724,378 + IAI46_03350 0.39 +0.1
724,378 + IAI46_03350 0.39 +1.2
724,378 + IAI46_03350 0.39 -0.3
724,378 + IAI46_03350 0.39 +0.2
724,379 - IAI46_03350 0.39 -0.0
724,379 - IAI46_03350 0.39 +0.4
724,379 - IAI46_03350 0.39 -0.5
724,379 - IAI46_03350 0.39 +0.3
724,454 + IAI46_03350 0.46 -0.6
724,466 - IAI46_03350 0.47 +0.7
724,483 + IAI46_03350 0.48 -1.0
724,483 + IAI46_03350 0.48 +0.9
724,484 - IAI46_03350 0.48 +0.6
724,549 - IAI46_03350 0.54 -1.8
724,549 - IAI46_03350 0.54 -0.4
724,549 - IAI46_03350 0.54 +0.3
724,614 + IAI46_03350 0.60 +0.6
724,618 + IAI46_03350 0.61 -1.0
724,618 + IAI46_03350 0.61 +0.3
724,618 + IAI46_03350 0.61 +0.3
724,619 - IAI46_03350 0.61 +0.9
724,648 + IAI46_03350 0.63 -0.5
724,707 + IAI46_03350 0.69 -0.8
724,820 + IAI46_03350 0.79 +0.1

Or see this region's nucleotide sequence