Strain Fitness in Serratia liquefaciens MT49 around IAI46_02790

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02785 and IAI46_02790 are separated by 235 nucleotidesIAI46_02790 and IAI46_02795 are separated by 38 nucleotidesIAI46_02795 and IAI46_02800 are separated by 14 nucleotides IAI46_02785: IAI46_02785 - FadR family transcriptional regulator, at 599,952 to 600,710 _02785 IAI46_02790: IAI46_02790 - SDR family oxidoreductase, at 600,946 to 601,686 _02790 IAI46_02795: IAI46_02795 - fumarylacetoacetate hydrolase family protein, at 601,725 to 602,570 _02795 IAI46_02800: IAI46_02800 - L-fuconate dehydratase, at 602,585 to 603,862 _02800 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 600.095 kb on + strand, within IAI46_02785at 600.095 kb on + strand, within IAI46_02785at 600.096 kb on - strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.097 kb on + strand, within IAI46_02785at 600.098 kb on - strand, within IAI46_02785at 600.098 kb on - strand, within IAI46_02785at 600.112 kb on - strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.158 kb on + strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.159 kb on - strand, within IAI46_02785at 600.166 kb on + strand, within IAI46_02785at 600.166 kb on + strand, within IAI46_02785at 600.167 kb on - strand, within IAI46_02785at 600.167 kb on - strand, within IAI46_02785at 600.266 kb on - strand, within IAI46_02785at 600.547 kb on - strand, within IAI46_02785at 600.676 kb on + strandat 600.755 kb on + strandat 600.756 kb on - strandat 600.759 kb on - strandat 600.759 kb on - strandat 600.827 kb on + strandat 600.828 kb on - strandat 600.861 kb on - strandat 600.896 kb on - strandat 600.954 kb on - strandat 601.104 kb on + strand, within IAI46_02790at 601.187 kb on + strand, within IAI46_02790at 601.187 kb on + strand, within IAI46_02790at 601.187 kb on + strand, within IAI46_02790at 601.188 kb on - strand, within IAI46_02790at 601.262 kb on - strand, within IAI46_02790at 601.323 kb on + strand, within IAI46_02790at 601.323 kb on + strand, within IAI46_02790at 601.323 kb on + strand, within IAI46_02790at 601.324 kb on - strand, within IAI46_02790at 601.324 kb on - strand, within IAI46_02790at 601.324 kb on - strand, within IAI46_02790at 601.403 kb on + strand, within IAI46_02790at 601.426 kb on + strand, within IAI46_02790at 601.544 kb on - strand, within IAI46_02790at 601.616 kb on - strandat 601.616 kb on - strandat 601.639 kb on + strandat 601.639 kb on + strandat 601.639 kb on + strandat 601.710 kb on + strandat 601.711 kb on - strandat 601.736 kb on - strandat 601.771 kb on + strandat 601.811 kb on + strand, within IAI46_02795at 601.812 kb on - strand, within IAI46_02795at 601.812 kb on - strand, within IAI46_02795at 601.963 kb on - strand, within IAI46_02795at 601.963 kb on - strand, within IAI46_02795at 602.114 kb on + strand, within IAI46_02795at 602.115 kb on - strand, within IAI46_02795at 602.133 kb on + strand, within IAI46_02795at 602.134 kb on - strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.225 kb on + strand, within IAI46_02795at 602.225 kb on + strand, within IAI46_02795at 602.400 kb on + strand, within IAI46_02795at 602.401 kb on - strand, within IAI46_02795at 602.414 kb on + strand, within IAI46_02795at 602.414 kb on + strand, within IAI46_02795at 602.415 kb on - strand, within IAI46_02795at 602.415 kb on - strand, within IAI46_02795at 602.561 kb on - strandat 602.596 kb on + strandat 602.617 kb on + strandat 602.617 kb on + strandat 602.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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600,095 + IAI46_02785 0.19 +0.2
600,095 + IAI46_02785 0.19 +0.3
600,096 - IAI46_02785 0.19 -0.4
600,097 + IAI46_02785 0.19 +0.3
600,097 + IAI46_02785 0.19 +0.6
600,097 + IAI46_02785 0.19 +1.6
600,098 - IAI46_02785 0.19 +0.4
600,098 - IAI46_02785 0.19 -0.0
600,112 - IAI46_02785 0.21 +0.4
600,158 + IAI46_02785 0.27 +0.0
600,158 + IAI46_02785 0.27 -0.3
600,158 + IAI46_02785 0.27 +1.6
600,159 - IAI46_02785 0.27 +0.7
600,159 - IAI46_02785 0.27 -0.4
600,159 - IAI46_02785 0.27 +1.6
600,159 - IAI46_02785 0.27 +0.1
600,166 + IAI46_02785 0.28 -0.6
600,166 + IAI46_02785 0.28 +0.5
600,167 - IAI46_02785 0.28 -0.2
600,167 - IAI46_02785 0.28 +0.2
600,266 - IAI46_02785 0.41 +0.3
600,547 - IAI46_02785 0.78 +0.2
600,676 + +0.7
600,755 + +0.9
600,756 - +0.5
600,759 - -0.5
600,759 - +0.2
600,827 + +0.9
600,828 - -0.5
600,861 - +0.1
600,896 - -1.5
600,954 - +0.0
601,104 + IAI46_02790 0.21 -0.4
601,187 + IAI46_02790 0.33 -0.5
601,187 + IAI46_02790 0.33 -0.7
601,187 + IAI46_02790 0.33 +0.6
601,188 - IAI46_02790 0.33 +0.1
601,262 - IAI46_02790 0.43 -0.1
601,323 + IAI46_02790 0.51 -0.6
601,323 + IAI46_02790 0.51 -0.5
601,323 + IAI46_02790 0.51 -0.9
601,324 - IAI46_02790 0.51 +0.3
601,324 - IAI46_02790 0.51 +0.1
601,324 - IAI46_02790 0.51 +0.1
601,403 + IAI46_02790 0.62 +1.2
601,426 + IAI46_02790 0.65 -0.3
601,544 - IAI46_02790 0.81 -0.2
601,616 - -0.2
601,616 - +0.3
601,639 + +0.1
601,639 + +0.6
601,639 + +0.2
601,710 + -1.6
601,711 - +0.9
601,736 - -1.1
601,771 + +0.1
601,811 + IAI46_02795 0.10 -1.0
601,812 - IAI46_02795 0.10 +0.6
601,812 - IAI46_02795 0.10 +0.7
601,963 - IAI46_02795 0.28 +0.4
601,963 - IAI46_02795 0.28 +1.1
602,114 + IAI46_02795 0.46 +1.2
602,115 - IAI46_02795 0.46 -0.0
602,133 + IAI46_02795 0.48 +0.3
602,134 - IAI46_02795 0.48 -0.3
602,135 + IAI46_02795 0.48 +0.7
602,135 + IAI46_02795 0.48 -3.0
602,135 + IAI46_02795 0.48 -0.5
602,135 + IAI46_02795 0.48 +0.2
602,136 - IAI46_02795 0.49 -1.2
602,136 - IAI46_02795 0.49 -0.1
602,136 - IAI46_02795 0.49 +1.8
602,136 - IAI46_02795 0.49 +0.1
602,136 - IAI46_02795 0.49 +0.0
602,225 + IAI46_02795 0.59 -2.6
602,225 + IAI46_02795 0.59 +0.6
602,400 + IAI46_02795 0.80 -0.0
602,401 - IAI46_02795 0.80 +0.4
602,414 + IAI46_02795 0.81 -0.5
602,414 + IAI46_02795 0.81 -1.1
602,415 - IAI46_02795 0.82 +0.3
602,415 - IAI46_02795 0.82 +0.3
602,561 - -1.2
602,596 + -0.0
602,617 + +0.0
602,617 + -0.8
602,678 + -0.7

Or see this region's nucleotide sequence