Strain Fitness in Serratia liquefaciens MT49 around IAI46_02650

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02645 and IAI46_02650 are separated by 259 nucleotidesIAI46_02650 and IAI46_02655 are separated by 134 nucleotides IAI46_02645: IAI46_02645 - aspartate aminotransferase family protein, at 571,030 to 572,370 _02645 IAI46_02650: IAI46_02650 - LysR family transcriptional regulator, at 572,630 to 573,559 _02650 IAI46_02655: IAI46_02655 - iron-containing alcohol dehydrogenase, at 573,694 to 574,821 _02655 Position (kb) 572 573 574Strain fitness (log2 ratio) -2 -1 0 1 2at 571.670 kb on - strand, within IAI46_02645at 571.863 kb on + strand, within IAI46_02645at 571.864 kb on - strand, within IAI46_02645at 571.905 kb on + strand, within IAI46_02645at 571.916 kb on + strand, within IAI46_02645at 571.935 kb on + strand, within IAI46_02645at 572.036 kb on + strand, within IAI46_02645at 572.036 kb on + strand, within IAI46_02645at 572.036 kb on + strand, within IAI46_02645at 572.037 kb on - strand, within IAI46_02645at 572.089 kb on + strand, within IAI46_02645at 572.089 kb on + strand, within IAI46_02645at 572.090 kb on - strand, within IAI46_02645at 572.121 kb on - strand, within IAI46_02645at 572.238 kb on + strandat 572.238 kb on + strandat 572.239 kb on - strandat 572.239 kb on - strandat 572.240 kb on + strandat 572.241 kb on - strandat 572.243 kb on + strandat 572.244 kb on - strandat 572.263 kb on + strandat 572.263 kb on + strandat 572.264 kb on - strandat 572.324 kb on - strandat 572.391 kb on + strandat 572.391 kb on + strandat 572.391 kb on + strandat 572.392 kb on - strandat 572.392 kb on - strandat 572.392 kb on - strandat 572.392 kb on - strandat 572.392 kb on - strandat 572.392 kb on - strandat 572.395 kb on + strandat 572.395 kb on + strandat 572.395 kb on + strandat 572.401 kb on + strandat 572.401 kb on + strandat 572.401 kb on + strandat 572.405 kb on + strandat 572.406 kb on - strandat 572.406 kb on - strandat 572.409 kb on + strandat 572.409 kb on + strandat 572.409 kb on + strandat 572.410 kb on - strandat 572.410 kb on - strandat 572.441 kb on + strandat 572.469 kb on - strandat 572.469 kb on - strandat 572.469 kb on - strandat 572.476 kb on + strandat 572.517 kb on - strandat 572.519 kb on - strandat 572.519 kb on - strandat 572.519 kb on - strandat 572.519 kb on - strandat 572.526 kb on - strandat 572.526 kb on - strandat 572.533 kb on - strandat 572.533 kb on - strandat 572.534 kb on + strandat 572.534 kb on + strandat 572.538 kb on + strandat 572.538 kb on + strandat 572.538 kb on + strandat 572.539 kb on - strandat 572.572 kb on + strandat 572.573 kb on - strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.606 kb on - strandat 572.618 kb on - strandat 572.618 kb on - strandat 572.621 kb on + strandat 572.629 kb on + strandat 572.695 kb on - strandat 572.698 kb on + strandat 572.749 kb on + strand, within IAI46_02650at 572.749 kb on + strand, within IAI46_02650at 572.750 kb on - strand, within IAI46_02650at 572.776 kb on + strand, within IAI46_02650at 572.776 kb on + strand, within IAI46_02650at 572.862 kb on + strand, within IAI46_02650at 572.862 kb on + strand, within IAI46_02650at 572.862 kb on + strand, within IAI46_02650at 572.863 kb on - strand, within IAI46_02650at 572.863 kb on - strand, within IAI46_02650at 572.863 kb on - strand, within IAI46_02650at 572.864 kb on + strand, within IAI46_02650at 572.864 kb on + strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 573.016 kb on - strand, within IAI46_02650at 573.054 kb on - strand, within IAI46_02650at 573.070 kb on + strand, within IAI46_02650at 573.070 kb on + strand, within IAI46_02650at 573.116 kb on - strand, within IAI46_02650at 573.144 kb on + strand, within IAI46_02650at 573.144 kb on + strand, within IAI46_02650at 573.144 kb on + strand, within IAI46_02650at 573.149 kb on + strand, within IAI46_02650at 573.151 kb on + strand, within IAI46_02650at 573.159 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.181 kb on - strand, within IAI46_02650at 573.182 kb on + strand, within IAI46_02650at 573.182 kb on + strand, within IAI46_02650at 573.183 kb on - strand, within IAI46_02650at 573.183 kb on - strand, within IAI46_02650at 573.183 kb on - strand, within IAI46_02650at 573.225 kb on + strand, within IAI46_02650at 573.225 kb on + strand, within IAI46_02650at 573.229 kb on + strand, within IAI46_02650at 573.230 kb on - strand, within IAI46_02650at 573.230 kb on - strand, within IAI46_02650at 573.268 kb on - strand, within IAI46_02650at 573.272 kb on + strand, within IAI46_02650at 573.273 kb on - strand, within IAI46_02650at 573.312 kb on + strand, within IAI46_02650at 573.312 kb on + strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.358 kb on - strand, within IAI46_02650at 573.374 kb on + strand, within IAI46_02650at 573.375 kb on - strand, within IAI46_02650at 573.375 kb on - strand, within IAI46_02650at 573.375 kb on - strand, within IAI46_02650at 573.399 kb on - strand, within IAI46_02650at 573.564 kb on + strandat 573.565 kb on - strandat 573.565 kb on - strandat 573.688 kb on - strandat 573.689 kb on + strandat 573.689 kb on + strandat 573.690 kb on - strandat 573.691 kb on + strandat 573.746 kb on + strandat 573.747 kb on - strandat 573.747 kb on - strandat 573.856 kb on - strand, within IAI46_02655at 573.856 kb on - strand, within IAI46_02655at 573.856 kb on - strand, within IAI46_02655at 573.856 kb on - strand, within IAI46_02655at 574.091 kb on + strand, within IAI46_02655at 574.092 kb on - strand, within IAI46_02655at 574.092 kb on - strand, within IAI46_02655at 574.105 kb on - strand, within IAI46_02655at 574.217 kb on + strand, within IAI46_02655at 574.218 kb on - strand, within IAI46_02655at 574.218 kb on - strand, within IAI46_02655at 574.256 kb on + strand, within IAI46_02655at 574.257 kb on - strand, within IAI46_02655at 574.329 kb on + strand, within IAI46_02655at 574.476 kb on + strand, within IAI46_02655at 574.477 kb on - strand, within IAI46_02655at 574.478 kb on + strand, within IAI46_02655at 574.479 kb on - strand, within IAI46_02655at 574.558 kb on + strand, within IAI46_02655

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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571,670 - IAI46_02645 0.48 -1.1
571,863 + IAI46_02645 0.62 +0.0
571,864 - IAI46_02645 0.62 +0.4
571,905 + IAI46_02645 0.65 -0.4
571,916 + IAI46_02645 0.66 +1.0
571,935 + IAI46_02645 0.67 -1.4
572,036 + IAI46_02645 0.75 +0.2
572,036 + IAI46_02645 0.75 +0.5
572,036 + IAI46_02645 0.75 -0.4
572,037 - IAI46_02645 0.75 +0.1
572,089 + IAI46_02645 0.79 -0.2
572,089 + IAI46_02645 0.79 +0.7
572,090 - IAI46_02645 0.79 +0.6
572,121 - IAI46_02645 0.81 +0.4
572,238 + -0.6
572,238 + +0.4
572,239 - -0.3
572,239 - +0.7
572,240 + -0.8
572,241 - -0.6
572,243 + -0.5
572,244 - +0.2
572,263 + +0.9
572,263 + -0.5
572,264 - -0.6
572,324 - +0.1
572,391 + +0.0
572,391 + +0.4
572,391 + -0.0
572,392 - +0.1
572,392 - +0.3
572,392 - +0.1
572,392 - -0.5
572,392 - +0.1
572,392 - +0.0
572,395 + +0.5
572,395 + -0.9
572,395 + -0.5
572,401 + +1.0
572,401 + -0.1
572,401 + -0.4
572,405 + +2.0
572,406 - -0.6
572,406 - -1.3
572,409 + -0.9
572,409 + -0.4
572,409 + -0.5
572,410 - -0.7
572,410 - -1.6
572,441 + -0.1
572,469 - -1.1
572,469 - +0.0
572,469 - -0.1
572,476 + -0.2
572,517 - -0.2
572,519 - +1.7
572,519 - -0.1
572,519 - +0.0
572,519 - +0.3
572,526 - +0.5
572,526 - +0.7
572,533 - +0.5
572,533 - -0.1
572,534 + -0.7
572,534 + +0.5
572,538 + -0.1
572,538 + +0.4
572,538 + -0.5
572,539 - +0.1
572,572 + +0.7
572,573 - -0.4
572,590 + +0.2
572,590 + +0.1
572,606 - +0.3
572,618 - +1.0
572,618 - -0.3
572,621 + +0.6
572,629 + -0.6
572,695 - +0.9
572,698 + +1.1
572,749 + IAI46_02650 0.13 -1.8
572,749 + IAI46_02650 0.13 +0.2
572,750 - IAI46_02650 0.13 -0.2
572,776 + IAI46_02650 0.16 +2.3
572,776 + IAI46_02650 0.16 +0.7
572,862 + IAI46_02650 0.25 -0.7
572,862 + IAI46_02650 0.25 +0.3
572,862 + IAI46_02650 0.25 +0.4
572,863 - IAI46_02650 0.25 +0.9
572,863 - IAI46_02650 0.25 +0.7
572,863 - IAI46_02650 0.25 +1.8
572,864 + IAI46_02650 0.25 +0.4
572,864 + IAI46_02650 0.25 -0.2
572,865 - IAI46_02650 0.25 +0.2
572,865 - IAI46_02650 0.25 +0.5
572,865 - IAI46_02650 0.25 +0.7
572,865 - IAI46_02650 0.25 +0.5
572,865 - IAI46_02650 0.25 -0.0
573,016 - IAI46_02650 0.42 +0.1
573,054 - IAI46_02650 0.46 -0.2
573,070 + IAI46_02650 0.47 -1.0
573,070 + IAI46_02650 0.47 +0.9
573,116 - IAI46_02650 0.52 -0.2
573,144 + IAI46_02650 0.55 +1.3
573,144 + IAI46_02650 0.55 -0.5
573,144 + IAI46_02650 0.55 +0.3
573,149 + IAI46_02650 0.56 +0.6
573,151 + IAI46_02650 0.56 +0.0
573,159 + IAI46_02650 0.57 +0.0
573,180 + IAI46_02650 0.59 -0.1
573,180 + IAI46_02650 0.59 +0.6
573,180 + IAI46_02650 0.59 -0.3
573,180 + IAI46_02650 0.59 -0.2
573,180 + IAI46_02650 0.59 -0.0
573,180 + IAI46_02650 0.59 +0.8
573,180 + IAI46_02650 0.59 -0.7
573,181 - IAI46_02650 0.59 -0.4
573,182 + IAI46_02650 0.59 +0.1
573,182 + IAI46_02650 0.59 +0.7
573,183 - IAI46_02650 0.59 -0.1
573,183 - IAI46_02650 0.59 +1.5
573,183 - IAI46_02650 0.59 -0.2
573,225 + IAI46_02650 0.64 -0.1
573,225 + IAI46_02650 0.64 -0.5
573,229 + IAI46_02650 0.64 +1.1
573,230 - IAI46_02650 0.65 +0.6
573,230 - IAI46_02650 0.65 +1.0
573,268 - IAI46_02650 0.69 +0.6
573,272 + IAI46_02650 0.69 -0.4
573,273 - IAI46_02650 0.69 -0.2
573,312 + IAI46_02650 0.73 +1.4
573,312 + IAI46_02650 0.73 -1.2
573,313 - IAI46_02650 0.73 +0.5
573,313 - IAI46_02650 0.73 -0.0
573,313 - IAI46_02650 0.73 -0.3
573,313 - IAI46_02650 0.73 +0.1
573,358 - IAI46_02650 0.78 +0.1
573,374 + IAI46_02650 0.80 +1.1
573,375 - IAI46_02650 0.80 +0.2
573,375 - IAI46_02650 0.80 +0.4
573,375 - IAI46_02650 0.80 -0.5
573,399 - IAI46_02650 0.83 -0.5
573,564 + -0.3
573,565 - +0.8
573,565 - -0.6
573,688 - +0.4
573,689 + +0.3
573,689 + -0.5
573,690 - +0.8
573,691 + -0.3
573,746 + +0.7
573,747 - +1.1
573,747 - +0.3
573,856 - IAI46_02655 0.14 +0.0
573,856 - IAI46_02655 0.14 +0.6
573,856 - IAI46_02655 0.14 +0.1
573,856 - IAI46_02655 0.14 +0.3
574,091 + IAI46_02655 0.35 +0.4
574,092 - IAI46_02655 0.35 -0.2
574,092 - IAI46_02655 0.35 +0.9
574,105 - IAI46_02655 0.36 -1.1
574,217 + IAI46_02655 0.46 +1.8
574,218 - IAI46_02655 0.46 -0.8
574,218 - IAI46_02655 0.46 +0.4
574,256 + IAI46_02655 0.50 -0.9
574,257 - IAI46_02655 0.50 +1.2
574,329 + IAI46_02655 0.56 +0.2
574,476 + IAI46_02655 0.69 +0.6
574,477 - IAI46_02655 0.69 +0.5
574,478 + IAI46_02655 0.70 +0.4
574,479 - IAI46_02655 0.70 +0.1
574,558 + IAI46_02655 0.77 +0.1

Or see this region's nucleotide sequence