Strain Fitness in Serratia liquefaciens MT49 around IAI46_02400

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02395 and IAI46_02400 are separated by 188 nucleotidesIAI46_02400 and IAI46_02405 are separated by 86 nucleotides IAI46_02395: IAI46_02395 - restriction endonuclease subunit S, at 508,898 to 509,884 _02395 IAI46_02400: IAI46_02400 - N-6 DNA methylase, at 510,073 to 511,695 _02400 IAI46_02405: IAI46_02405 - DEAD/DEAH box helicase family protein, at 511,782 to 515,195 _02405 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 509.101 kb on + strand, within IAI46_02395at 509.117 kb on - strand, within IAI46_02395at 509.357 kb on + strand, within IAI46_02395at 509.395 kb on + strand, within IAI46_02395at 509.406 kb on + strand, within IAI46_02395at 509.431 kb on + strand, within IAI46_02395at 509.446 kb on - strand, within IAI46_02395at 509.599 kb on + strand, within IAI46_02395at 509.663 kb on + strand, within IAI46_02395at 509.673 kb on - strand, within IAI46_02395at 509.693 kb on - strand, within IAI46_02395at 509.735 kb on + strand, within IAI46_02395at 509.771 kb on - strand, within IAI46_02395at 509.844 kb on - strandat 510.034 kb on + strandat 510.034 kb on + strandat 510.277 kb on - strand, within IAI46_02400at 510.363 kb on + strand, within IAI46_02400at 510.432 kb on + strand, within IAI46_02400at 510.432 kb on + strand, within IAI46_02400at 510.447 kb on - strand, within IAI46_02400at 510.456 kb on + strand, within IAI46_02400at 510.460 kb on + strand, within IAI46_02400at 510.461 kb on - strand, within IAI46_02400at 510.475 kb on + strand, within IAI46_02400at 510.476 kb on - strand, within IAI46_02400at 510.540 kb on + strand, within IAI46_02400at 510.541 kb on - strand, within IAI46_02400at 510.562 kb on + strand, within IAI46_02400at 510.563 kb on - strand, within IAI46_02400at 510.565 kb on - strand, within IAI46_02400at 510.592 kb on + strand, within IAI46_02400at 510.600 kb on + strand, within IAI46_02400at 510.600 kb on + strand, within IAI46_02400at 510.601 kb on - strand, within IAI46_02400at 510.604 kb on + strand, within IAI46_02400at 510.634 kb on + strand, within IAI46_02400at 510.649 kb on + strand, within IAI46_02400at 510.649 kb on + strand, within IAI46_02400at 510.649 kb on + strand, within IAI46_02400at 510.650 kb on - strand, within IAI46_02400at 510.650 kb on - strand, within IAI46_02400at 510.652 kb on - strand, within IAI46_02400at 510.694 kb on - strand, within IAI46_02400at 510.739 kb on + strand, within IAI46_02400at 510.769 kb on + strand, within IAI46_02400at 510.769 kb on + strand, within IAI46_02400at 510.769 kb on + strand, within IAI46_02400at 510.769 kb on + strand, within IAI46_02400at 510.770 kb on - strand, within IAI46_02400at 510.770 kb on - strand, within IAI46_02400at 510.802 kb on + strand, within IAI46_02400at 510.808 kb on - strand, within IAI46_02400at 510.869 kb on + strand, within IAI46_02400at 510.890 kb on - strand, within IAI46_02400at 510.900 kb on + strand, within IAI46_02400at 510.900 kb on + strand, within IAI46_02400at 510.900 kb on + strand, within IAI46_02400at 510.901 kb on - strand, within IAI46_02400at 511.048 kb on + strand, within IAI46_02400at 511.048 kb on + strand, within IAI46_02400at 511.078 kb on - strand, within IAI46_02400at 511.079 kb on + strand, within IAI46_02400at 511.094 kb on + strand, within IAI46_02400at 511.094 kb on + strand, within IAI46_02400at 511.094 kb on + strand, within IAI46_02400at 511.094 kb on + strand, within IAI46_02400at 511.094 kb on + strand, within IAI46_02400at 511.095 kb on - strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.100 kb on + strand, within IAI46_02400at 511.101 kb on - strand, within IAI46_02400at 511.101 kb on - strand, within IAI46_02400at 511.101 kb on - strand, within IAI46_02400at 511.101 kb on - strand, within IAI46_02400at 511.104 kb on + strand, within IAI46_02400at 511.104 kb on + strand, within IAI46_02400at 511.105 kb on - strand, within IAI46_02400at 511.105 kb on - strand, within IAI46_02400at 511.105 kb on - strand, within IAI46_02400at 511.108 kb on - strand, within IAI46_02400at 511.108 kb on - strand, within IAI46_02400at 511.155 kb on + strand, within IAI46_02400at 511.230 kb on + strand, within IAI46_02400at 511.230 kb on + strand, within IAI46_02400at 511.230 kb on + strand, within IAI46_02400at 511.231 kb on - strand, within IAI46_02400at 511.260 kb on - strand, within IAI46_02400at 511.265 kb on + strand, within IAI46_02400at 511.265 kb on + strand, within IAI46_02400at 511.265 kb on + strand, within IAI46_02400at 511.318 kb on + strand, within IAI46_02400at 511.319 kb on - strand, within IAI46_02400at 511.346 kb on - strand, within IAI46_02400at 511.348 kb on + strand, within IAI46_02400at 511.348 kb on + strand, within IAI46_02400at 511.349 kb on - strand, within IAI46_02400at 511.349 kb on - strand, within IAI46_02400at 511.403 kb on - strand, within IAI46_02400at 511.463 kb on - strand, within IAI46_02400at 511.470 kb on + strand, within IAI46_02400at 511.471 kb on - strand, within IAI46_02400at 511.471 kb on - strand, within IAI46_02400at 511.473 kb on - strand, within IAI46_02400at 511.586 kb on + strandat 511.586 kb on + strandat 511.587 kb on - strandat 511.587 kb on - strandat 511.657 kb on + strandat 511.662 kb on + strandat 511.663 kb on - strandat 511.679 kb on - strandat 511.695 kb on + strandat 511.695 kb on + strandat 511.695 kb on + strandat 511.695 kb on + strandat 511.696 kb on - strandat 511.696 kb on - strandat 511.696 kb on - strandat 511.696 kb on - strandat 511.783 kb on + strandat 511.783 kb on + strandat 511.783 kb on + strandat 511.783 kb on + strandat 511.783 kb on + strandat 511.784 kb on - strandat 511.784 kb on - strandat 511.784 kb on - strandat 511.784 kb on - strandat 511.784 kb on - strandat 511.786 kb on - strandat 511.806 kb on + strandat 511.806 kb on + strandat 511.821 kb on + strandat 511.854 kb on - strandat 511.887 kb on + strandat 511.887 kb on + strandat 511.887 kb on + strandat 511.887 kb on + strandat 511.888 kb on - strandat 511.888 kb on - strandat 511.896 kb on - strandat 511.928 kb on + strandat 511.929 kb on - strandat 511.931 kb on + strandat 511.936 kb on + strandat 511.937 kb on - strandat 512.028 kb on + strandat 512.046 kb on - strandat 512.058 kb on - strandat 512.061 kb on + strandat 512.061 kb on + strandat 512.062 kb on - strandat 512.062 kb on - strandat 512.154 kb on + strand, within IAI46_02405at 512.334 kb on - strand, within IAI46_02405at 512.337 kb on + strand, within IAI46_02405at 512.337 kb on + strand, within IAI46_02405at 512.338 kb on - strand, within IAI46_02405at 512.338 kb on - strand, within IAI46_02405at 512.338 kb on - strand, within IAI46_02405at 512.388 kb on + strand, within IAI46_02405at 512.388 kb on + strand, within IAI46_02405at 512.451 kb on + strand, within IAI46_02405at 512.511 kb on + strand, within IAI46_02405at 512.547 kb on + strand, within IAI46_02405at 512.547 kb on + strand, within IAI46_02405at 512.553 kb on + strand, within IAI46_02405at 512.634 kb on + strand, within IAI46_02405at 512.634 kb on + strand, within IAI46_02405at 512.635 kb on - strand, within IAI46_02405at 512.671 kb on - strand, within IAI46_02405

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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509,101 + IAI46_02395 0.21 -1.3
509,117 - IAI46_02395 0.22 +1.7
509,357 + IAI46_02395 0.47 +1.9
509,395 + IAI46_02395 0.50 +0.7
509,406 + IAI46_02395 0.51 -0.0
509,431 + IAI46_02395 0.54 -0.6
509,446 - IAI46_02395 0.56 +1.0
509,599 + IAI46_02395 0.71 +0.8
509,663 + IAI46_02395 0.78 -0.2
509,673 - IAI46_02395 0.79 +0.5
509,693 - IAI46_02395 0.81 -0.4
509,735 + IAI46_02395 0.85 -0.9
509,771 - IAI46_02395 0.88 -0.1
509,844 - +0.8
510,034 + +0.4
510,034 + +0.8
510,277 - IAI46_02400 0.13 -0.8
510,363 + IAI46_02400 0.18 -1.0
510,432 + IAI46_02400 0.22 -0.5
510,432 + IAI46_02400 0.22 +0.4
510,447 - IAI46_02400 0.23 -0.0
510,456 + IAI46_02400 0.24 +0.3
510,460 + IAI46_02400 0.24 +0.8
510,461 - IAI46_02400 0.24 -0.1
510,475 + IAI46_02400 0.25 -0.2
510,476 - IAI46_02400 0.25 +1.2
510,540 + IAI46_02400 0.29 -1.4
510,541 - IAI46_02400 0.29 +1.0
510,562 + IAI46_02400 0.30 -0.7
510,563 - IAI46_02400 0.30 -0.3
510,565 - IAI46_02400 0.30 +0.7
510,592 + IAI46_02400 0.32 +0.2
510,600 + IAI46_02400 0.32 +0.4
510,600 + IAI46_02400 0.32 +1.0
510,601 - IAI46_02400 0.33 +0.3
510,604 + IAI46_02400 0.33 -1.3
510,634 + IAI46_02400 0.35 -0.3
510,649 + IAI46_02400 0.35 +1.8
510,649 + IAI46_02400 0.35 +0.7
510,649 + IAI46_02400 0.35 -0.4
510,650 - IAI46_02400 0.36 -1.4
510,650 - IAI46_02400 0.36 +0.6
510,652 - IAI46_02400 0.36 -0.3
510,694 - IAI46_02400 0.38 -0.3
510,739 + IAI46_02400 0.41 +1.3
510,769 + IAI46_02400 0.43 +0.3
510,769 + IAI46_02400 0.43 -0.1
510,769 + IAI46_02400 0.43 +0.2
510,769 + IAI46_02400 0.43 -0.0
510,770 - IAI46_02400 0.43 -0.1
510,770 - IAI46_02400 0.43 +0.3
510,802 + IAI46_02400 0.45 -0.5
510,808 - IAI46_02400 0.45 +0.9
510,869 + IAI46_02400 0.49 -0.1
510,890 - IAI46_02400 0.50 +1.6
510,900 + IAI46_02400 0.51 +0.2
510,900 + IAI46_02400 0.51 +0.1
510,900 + IAI46_02400 0.51 +0.4
510,901 - IAI46_02400 0.51 -1.4
511,048 + IAI46_02400 0.60 +1.5
511,048 + IAI46_02400 0.60 -0.7
511,078 - IAI46_02400 0.62 +1.1
511,079 + IAI46_02400 0.62 +0.2
511,094 + IAI46_02400 0.63 -0.2
511,094 + IAI46_02400 0.63 +0.3
511,094 + IAI46_02400 0.63 +0.8
511,094 + IAI46_02400 0.63 -0.1
511,094 + IAI46_02400 0.63 +0.8
511,095 - IAI46_02400 0.63 -0.7
511,100 + IAI46_02400 0.63 -1.2
511,100 + IAI46_02400 0.63 +0.3
511,100 + IAI46_02400 0.63 +0.7
511,100 + IAI46_02400 0.63 +0.9
511,100 + IAI46_02400 0.63 +0.6
511,100 + IAI46_02400 0.63 +0.8
511,100 + IAI46_02400 0.63 +0.2
511,100 + IAI46_02400 0.63 +0.2
511,101 - IAI46_02400 0.63 +1.0
511,101 - IAI46_02400 0.63 +0.4
511,101 - IAI46_02400 0.63 +0.6
511,101 - IAI46_02400 0.63 +0.2
511,104 + IAI46_02400 0.64 +0.2
511,104 + IAI46_02400 0.64 -0.0
511,105 - IAI46_02400 0.64 +1.0
511,105 - IAI46_02400 0.64 +0.1
511,105 - IAI46_02400 0.64 -0.3
511,108 - IAI46_02400 0.64 +0.1
511,108 - IAI46_02400 0.64 -0.0
511,155 + IAI46_02400 0.67 +0.1
511,230 + IAI46_02400 0.71 +1.2
511,230 + IAI46_02400 0.71 -0.0
511,230 + IAI46_02400 0.71 +0.2
511,231 - IAI46_02400 0.71 +0.2
511,260 - IAI46_02400 0.73 -0.2
511,265 + IAI46_02400 0.73 -0.2
511,265 + IAI46_02400 0.73 -0.2
511,265 + IAI46_02400 0.73 -1.1
511,318 + IAI46_02400 0.77 -0.1
511,319 - IAI46_02400 0.77 +0.5
511,346 - IAI46_02400 0.78 -0.4
511,348 + IAI46_02400 0.79 +0.2
511,348 + IAI46_02400 0.79 -0.5
511,349 - IAI46_02400 0.79 +0.6
511,349 - IAI46_02400 0.79 +0.4
511,403 - IAI46_02400 0.82 +0.7
511,463 - IAI46_02400 0.86 -0.2
511,470 + IAI46_02400 0.86 -0.8
511,471 - IAI46_02400 0.86 +0.5
511,471 - IAI46_02400 0.86 +0.4
511,473 - IAI46_02400 0.86 -0.4
511,586 + -0.3
511,586 + +2.3
511,587 - -0.1
511,587 - +0.0
511,657 + +0.3
511,662 + +0.2
511,663 - -0.4
511,679 - -1.2
511,695 + -0.1
511,695 + -0.4
511,695 + -1.9
511,695 + -0.2
511,696 - +0.1
511,696 - -0.3
511,696 - -0.6
511,696 - +0.2
511,783 + +2.0
511,783 + -0.8
511,783 + +1.6
511,783 + +0.2
511,783 + +0.4
511,784 - +0.1
511,784 - -0.4
511,784 - +0.6
511,784 - -0.9
511,784 - -0.6
511,786 - -0.3
511,806 + +0.7
511,806 + -0.2
511,821 + +1.2
511,854 - +0.6
511,887 + -0.6
511,887 + +1.4
511,887 + +0.0
511,887 + -0.2
511,888 - -1.1
511,888 - +0.7
511,896 - -0.8
511,928 + -0.7
511,929 - -1.5
511,931 + -0.3
511,936 + -0.5
511,937 - -1.1
512,028 + +0.0
512,046 - +0.6
512,058 - +0.5
512,061 + +0.2
512,061 + -0.5
512,062 - -0.5
512,062 - -2.3
512,154 + IAI46_02405 0.11 +0.4
512,334 - IAI46_02405 0.16 +0.5
512,337 + IAI46_02405 0.16 -0.3
512,337 + IAI46_02405 0.16 +0.7
512,338 - IAI46_02405 0.16 -0.3
512,338 - IAI46_02405 0.16 -0.0
512,338 - IAI46_02405 0.16 -0.0
512,388 + IAI46_02405 0.18 -0.1
512,388 + IAI46_02405 0.18 +1.0
512,451 + IAI46_02405 0.20 -0.0
512,511 + IAI46_02405 0.21 +0.1
512,547 + IAI46_02405 0.22 +0.4
512,547 + IAI46_02405 0.22 +0.3
512,553 + IAI46_02405 0.23 +0.7
512,634 + IAI46_02405 0.25 +0.3
512,634 + IAI46_02405 0.25 -0.2
512,635 - IAI46_02405 0.25 +0.4
512,671 - IAI46_02405 0.26 +0.2

Or see this region's nucleotide sequence