Strain Fitness in Serratia liquefaciens MT49 around IAI46_01745

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01740 and IAI46_01745 are separated by 256 nucleotidesIAI46_01745 and IAI46_01750 are separated by 1 nucleotidesIAI46_01750 and IAI46_01755 are separated by 326 nucleotides IAI46_01740: IAI46_01740 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 375,631 to 377,583 _01740 IAI46_01745: IAI46_01745 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 377,840 to 378,580 _01745 IAI46_01750: IAI46_01750 - YtfJ family protein, at 378,582 to 379,139 _01750 IAI46_01755: IAI46_01755 - DUF1107 domain-containing protein, at 379,466 to 379,672 _01755 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2at 376.850 kb on + strand, within IAI46_01740at 376.850 kb on + strand, within IAI46_01740at 376.851 kb on - strand, within IAI46_01740at 376.853 kb on + strand, within IAI46_01740at 376.853 kb on + strand, within IAI46_01740at 376.854 kb on - strand, within IAI46_01740at 376.880 kb on + strand, within IAI46_01740at 376.881 kb on - strand, within IAI46_01740at 376.938 kb on + strand, within IAI46_01740at 376.939 kb on - strand, within IAI46_01740at 376.955 kb on + strand, within IAI46_01740at 376.956 kb on - strand, within IAI46_01740at 376.989 kb on + strand, within IAI46_01740at 376.989 kb on + strand, within IAI46_01740at 377.052 kb on - strand, within IAI46_01740at 377.052 kb on - strand, within IAI46_01740at 377.063 kb on - strand, within IAI46_01740at 377.063 kb on - strand, within IAI46_01740at 377.067 kb on + strand, within IAI46_01740at 377.067 kb on + strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.109 kb on + strand, within IAI46_01740at 377.114 kb on + strand, within IAI46_01740at 377.115 kb on - strand, within IAI46_01740at 377.115 kb on - strand, within IAI46_01740at 377.166 kb on + strand, within IAI46_01740at 377.167 kb on - strand, within IAI46_01740at 377.167 kb on - strand, within IAI46_01740at 377.169 kb on - strand, within IAI46_01740at 377.205 kb on - strand, within IAI46_01740at 377.252 kb on + strand, within IAI46_01740at 377.274 kb on + strand, within IAI46_01740at 377.275 kb on - strand, within IAI46_01740at 377.275 kb on - strand, within IAI46_01740at 377.275 kb on - strand, within IAI46_01740at 377.276 kb on + strand, within IAI46_01740at 377.276 kb on + strand, within IAI46_01740at 377.277 kb on - strand, within IAI46_01740at 377.277 kb on - strand, within IAI46_01740at 377.319 kb on + strand, within IAI46_01740at 377.319 kb on + strand, within IAI46_01740at 377.320 kb on - strand, within IAI46_01740at 377.320 kb on - strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.322 kb on - strand, within IAI46_01740at 377.368 kb on + strand, within IAI46_01740at 377.369 kb on - strand, within IAI46_01740at 377.369 kb on - strand, within IAI46_01740at 377.445 kb on + strandat 377.453 kb on + strandat 377.454 kb on - strandat 377.454 kb on - strandat 377.616 kb on + strandat 377.633 kb on + strandat 377.634 kb on - strandat 377.638 kb on - strandat 377.638 kb on - strandat 377.744 kb on + strandat 377.745 kb on - strandat 377.752 kb on + strandat 377.753 kb on - strandat 377.761 kb on + strandat 377.761 kb on + strandat 377.780 kb on + strandat 377.781 kb on - strandat 377.788 kb on + strandat 377.788 kb on + strandat 377.788 kb on + strandat 377.789 kb on - strandat 377.789 kb on - strandat 378.210 kb on - strand, within IAI46_01745at 378.410 kb on - strand, within IAI46_01745at 378.528 kb on - strandat 378.528 kb on - strandat 378.529 kb on + strandat 378.530 kb on - strandat 378.549 kb on + strandat 378.579 kb on - strandat 378.843 kb on + strand, within IAI46_01750at 378.843 kb on + strand, within IAI46_01750at 378.878 kb on + strand, within IAI46_01750at 378.878 kb on + strand, within IAI46_01750at 378.879 kb on - strand, within IAI46_01750at 378.879 kb on - strand, within IAI46_01750at 378.887 kb on + strand, within IAI46_01750at 378.888 kb on - strand, within IAI46_01750at 378.888 kb on - strand, within IAI46_01750at 378.930 kb on - strand, within IAI46_01750at 378.941 kb on + strand, within IAI46_01750at 378.941 kb on + strand, within IAI46_01750at 378.941 kb on + strand, within IAI46_01750at 378.941 kb on + strand, within IAI46_01750at 378.941 kb on + strand, within IAI46_01750at 378.941 kb on + strand, within IAI46_01750at 378.942 kb on - strand, within IAI46_01750at 378.942 kb on - strand, within IAI46_01750at 378.948 kb on + strand, within IAI46_01750at 378.948 kb on + strand, within IAI46_01750at 378.948 kb on + strand, within IAI46_01750at 378.949 kb on - strand, within IAI46_01750at 378.949 kb on - strand, within IAI46_01750at 378.981 kb on - strand, within IAI46_01750at 378.994 kb on + strand, within IAI46_01750at 378.998 kb on + strand, within IAI46_01750at 378.998 kb on + strand, within IAI46_01750at 378.999 kb on - strand, within IAI46_01750at 378.999 kb on - strand, within IAI46_01750at 378.999 kb on - strand, within IAI46_01750at 378.999 kb on - strand, within IAI46_01750at 379.005 kb on - strand, within IAI46_01750at 379.005 kb on - strand, within IAI46_01750at 379.005 kb on - strand, within IAI46_01750at 379.005 kb on - strand, within IAI46_01750at 379.015 kb on + strand, within IAI46_01750at 379.032 kb on - strand, within IAI46_01750at 379.090 kb on - strandat 379.090 kb on - strandat 379.118 kb on + strandat 379.119 kb on - strandat 379.119 kb on - strandat 379.185 kb on + strandat 379.192 kb on + strandat 379.192 kb on + strandat 379.193 kb on - strandat 379.193 kb on - strandat 379.193 kb on - strandat 379.193 kb on - strandat 379.193 kb on - strandat 379.219 kb on + strandat 379.250 kb on + strandat 379.272 kb on + strandat 379.275 kb on - strandat 379.291 kb on - strandat 379.291 kb on - strandat 379.291 kb on - strandat 379.294 kb on - strandat 379.294 kb on - strandat 379.301 kb on - strandat 379.301 kb on - strandat 379.365 kb on + strandat 379.366 kb on - strandat 379.366 kb on - strandat 379.366 kb on - strandat 379.369 kb on - strandat 379.369 kb on - strandat 379.369 kb on - strandat 379.369 kb on - strandat 379.374 kb on + strandat 379.374 kb on + strandat 379.375 kb on - strandat 379.377 kb on + strandat 379.377 kb on + strandat 379.377 kb on + strandat 379.377 kb on + strandat 379.378 kb on - strandat 379.378 kb on - strandat 379.378 kb on - strandat 379.378 kb on - strandat 379.378 kb on - strandat 379.402 kb on - strandat 379.406 kb on + strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.460 kb on - strandat 379.462 kb on + strandat 379.462 kb on + strandat 379.463 kb on - strandat 379.463 kb on - strandat 379.463 kb on - strandat 379.484 kb on + strandat 379.485 kb on - strandat 379.485 kb on - strandat 379.485 kb on - strandat 379.485 kb on - strandat 379.486 kb on + strandat 379.486 kb on + strandat 379.512 kb on + strand, within IAI46_01755at 379.512 kb on + strand, within IAI46_01755at 379.513 kb on - strand, within IAI46_01755at 379.513 kb on - strand, within IAI46_01755at 379.537 kb on + strand, within IAI46_01755at 379.538 kb on + strand, within IAI46_01755at 379.539 kb on - strand, within IAI46_01755at 379.539 kb on - strand, within IAI46_01755at 379.540 kb on + strand, within IAI46_01755at 379.551 kb on + strand, within IAI46_01755at 379.551 kb on + strand, within IAI46_01755at 379.551 kb on + strand, within IAI46_01755at 379.552 kb on - strand, within IAI46_01755

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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376,850 + IAI46_01740 0.62 +1.2
376,850 + IAI46_01740 0.62 +0.5
376,851 - IAI46_01740 0.62 -1.3
376,853 + IAI46_01740 0.63 +0.1
376,853 + IAI46_01740 0.63 -0.3
376,854 - IAI46_01740 0.63 -1.2
376,880 + IAI46_01740 0.64 -0.1
376,881 - IAI46_01740 0.64 +0.4
376,938 + IAI46_01740 0.67 -1.2
376,939 - IAI46_01740 0.67 -1.0
376,955 + IAI46_01740 0.68 -0.6
376,956 - IAI46_01740 0.68 +0.4
376,989 + IAI46_01740 0.70 +0.5
376,989 + IAI46_01740 0.70 +1.5
377,052 - IAI46_01740 0.73 -0.1
377,052 - IAI46_01740 0.73 -0.4
377,063 - IAI46_01740 0.73 -0.3
377,063 - IAI46_01740 0.73 +0.1
377,067 + IAI46_01740 0.74 -0.6
377,067 + IAI46_01740 0.74 -0.6
377,068 - IAI46_01740 0.74 +0.5
377,068 - IAI46_01740 0.74 +0.4
377,068 - IAI46_01740 0.74 -0.2
377,068 - IAI46_01740 0.74 -0.6
377,109 + IAI46_01740 0.76 -0.3
377,114 + IAI46_01740 0.76 +1.7
377,115 - IAI46_01740 0.76 +0.5
377,115 - IAI46_01740 0.76 +1.6
377,166 + IAI46_01740 0.79 +1.1
377,167 - IAI46_01740 0.79 +0.4
377,167 - IAI46_01740 0.79 +1.0
377,169 - IAI46_01740 0.79 +0.5
377,205 - IAI46_01740 0.81 +1.2
377,252 + IAI46_01740 0.83 -1.7
377,274 + IAI46_01740 0.84 +1.0
377,275 - IAI46_01740 0.84 -0.2
377,275 - IAI46_01740 0.84 +0.4
377,275 - IAI46_01740 0.84 +0.2
377,276 + IAI46_01740 0.84 -1.1
377,276 + IAI46_01740 0.84 -0.3
377,277 - IAI46_01740 0.84 -0.1
377,277 - IAI46_01740 0.84 +0.1
377,319 + IAI46_01740 0.86 -1.5
377,319 + IAI46_01740 0.86 +0.4
377,320 - IAI46_01740 0.86 +0.7
377,320 - IAI46_01740 0.86 +0.7
377,321 + IAI46_01740 0.87 -0.1
377,321 + IAI46_01740 0.87 -0.1
377,321 + IAI46_01740 0.87 -0.6
377,321 + IAI46_01740 0.87 -0.1
377,321 + IAI46_01740 0.87 +0.4
377,321 + IAI46_01740 0.87 +0.6
377,321 + IAI46_01740 0.87 +0.2
377,322 - IAI46_01740 0.87 -1.2
377,368 + IAI46_01740 0.89 +1.0
377,369 - IAI46_01740 0.89 -0.2
377,369 - IAI46_01740 0.89 +0.2
377,445 + +0.3
377,453 + +0.3
377,454 - +0.9
377,454 - -0.4
377,616 + +0.4
377,633 + -0.1
377,634 - +0.2
377,638 - +0.3
377,638 - +0.4
377,744 + -0.2
377,745 - +0.8
377,752 + +0.1
377,753 - -0.1
377,761 + +0.1
377,761 + -0.4
377,780 + -0.2
377,781 - -1.2
377,788 + +1.2
377,788 + +0.2
377,788 + -0.0
377,789 - +0.0
377,789 - -0.9
378,210 - IAI46_01745 0.50 -1.4
378,410 - IAI46_01745 0.77 -0.3
378,528 - -0.4
378,528 - +0.3
378,529 + -0.3
378,530 - -0.5
378,549 + -0.2
378,579 - +1.8
378,843 + IAI46_01750 0.47 -1.3
378,843 + IAI46_01750 0.47 +0.2
378,878 + IAI46_01750 0.53 -0.2
378,878 + IAI46_01750 0.53 -1.0
378,879 - IAI46_01750 0.53 -0.0
378,879 - IAI46_01750 0.53 +0.2
378,887 + IAI46_01750 0.55 +0.2
378,888 - IAI46_01750 0.55 +0.1
378,888 - IAI46_01750 0.55 +0.0
378,930 - IAI46_01750 0.62 +1.3
378,941 + IAI46_01750 0.64 +0.3
378,941 + IAI46_01750 0.64 +1.0
378,941 + IAI46_01750 0.64 +1.2
378,941 + IAI46_01750 0.64 -1.2
378,941 + IAI46_01750 0.64 +0.4
378,941 + IAI46_01750 0.64 -0.7
378,942 - IAI46_01750 0.65 -0.2
378,942 - IAI46_01750 0.65 -1.2
378,948 + IAI46_01750 0.66 +0.2
378,948 + IAI46_01750 0.66 -1.2
378,948 + IAI46_01750 0.66 +0.1
378,949 - IAI46_01750 0.66 -0.2
378,949 - IAI46_01750 0.66 -0.2
378,981 - IAI46_01750 0.72 +0.4
378,994 + IAI46_01750 0.74 -0.5
378,998 + IAI46_01750 0.75 -0.3
378,998 + IAI46_01750 0.75 +0.1
378,999 - IAI46_01750 0.75 -0.2
378,999 - IAI46_01750 0.75 +0.3
378,999 - IAI46_01750 0.75 +0.2
378,999 - IAI46_01750 0.75 +0.5
379,005 - IAI46_01750 0.76 +0.7
379,005 - IAI46_01750 0.76 +0.2
379,005 - IAI46_01750 0.76 +0.8
379,005 - IAI46_01750 0.76 +1.4
379,015 + IAI46_01750 0.78 +0.8
379,032 - IAI46_01750 0.81 +0.1
379,090 - -0.8
379,090 - -0.0
379,118 + -0.1
379,119 - -0.1
379,119 - +1.0
379,185 + +0.6
379,192 + +0.6
379,192 + +0.0
379,193 - -0.3
379,193 - -0.0
379,193 - -0.1
379,193 - -0.7
379,193 - +1.0
379,219 + -0.0
379,250 + -0.2
379,272 + +1.3
379,275 - -1.3
379,291 - -0.9
379,291 - -0.5
379,291 - -0.0
379,294 - +0.6
379,294 - +1.4
379,301 - +1.4
379,301 - -1.1
379,365 + -0.1
379,366 - -0.9
379,366 - -0.1
379,366 - +0.5
379,369 - -0.3
379,369 - -0.1
379,369 - -1.9
379,369 - +0.2
379,374 + -0.1
379,374 + -1.1
379,375 - +0.7
379,377 + -0.0
379,377 + -0.5
379,377 + +0.2
379,377 + -0.3
379,378 - +0.2
379,378 - +0.4
379,378 - +0.1
379,378 - -0.3
379,378 - +0.1
379,402 - -0.2
379,406 + +0.2
379,459 + -0.7
379,459 + -0.1
379,459 + +0.5
379,459 + -1.2
379,460 - -0.6
379,462 + -0.4
379,462 + -0.2
379,463 - +0.8
379,463 - +1.0
379,463 - -0.2
379,484 + -0.2
379,485 - +0.6
379,485 - +0.4
379,485 - +0.1
379,485 - +0.6
379,486 + -0.4
379,486 + -0.5
379,512 + IAI46_01755 0.22 -0.1
379,512 + IAI46_01755 0.22 +0.1
379,513 - IAI46_01755 0.23 -0.4
379,513 - IAI46_01755 0.23 -0.8
379,537 + IAI46_01755 0.34 -0.0
379,538 + IAI46_01755 0.35 -0.5
379,539 - IAI46_01755 0.35 +0.8
379,539 - IAI46_01755 0.35 +0.9
379,540 + IAI46_01755 0.36 +0.8
379,551 + IAI46_01755 0.41 +0.3
379,551 + IAI46_01755 0.41 +0.1
379,551 + IAI46_01755 0.41 +0.4
379,552 - IAI46_01755 0.42 -0.6

Or see this region's nucleotide sequence