Strain Fitness in Serratia liquefaciens MT49 around IAI46_01620

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01615 and IAI46_01620 overlap by 8 nucleotidesIAI46_01620 and IAI46_01625 are separated by 114 nucleotidesIAI46_01625 and IAI46_01630 are separated by 95 nucleotides IAI46_01615: IAI46_01615 - DNA mismatch repair endonuclease MutL, at 353,792 to 355,666 _01615 IAI46_01620: IAI46_01620 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 355,659 to 356,600 _01620 IAI46_01625: IAI46_01625 - RNA chaperone Hfq, at 356,715 to 357,023 _01625 IAI46_01630: IAI46_01630 - GTPase HflX, at 357,119 to 358,399 _01630 Position (kb) 355 356 357Strain fitness (log2 ratio) -2 -1 0 1 2at 354.659 kb on + strand, within IAI46_01615at 354.659 kb on + strand, within IAI46_01615at 354.685 kb on - strand, within IAI46_01615at 354.742 kb on - strand, within IAI46_01615at 354.751 kb on + strand, within IAI46_01615at 354.751 kb on + strand, within IAI46_01615at 354.752 kb on - strand, within IAI46_01615at 354.752 kb on - strand, within IAI46_01615at 354.755 kb on + strand, within IAI46_01615at 354.769 kb on + strand, within IAI46_01615at 354.770 kb on - strand, within IAI46_01615at 354.959 kb on + strand, within IAI46_01615at 355.078 kb on - strand, within IAI46_01615at 355.235 kb on - strand, within IAI46_01615at 355.395 kb on + strand, within IAI46_01615at 355.396 kb on - strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.446 kb on + strand, within IAI46_01615at 355.447 kb on - strand, within IAI46_01615at 355.447 kb on - strand, within IAI46_01615at 355.447 kb on - strand, within IAI46_01615at 355.451 kb on + strand, within IAI46_01615at 355.489 kb on - strandat 355.512 kb on + strandat 355.512 kb on + strandat 355.551 kb on + strandat 355.633 kb on - strandat 355.990 kb on - strand, within IAI46_01620at 356.015 kb on - strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.428 kb on - strand, within IAI46_01620at 356.431 kb on + strand, within IAI46_01620at 356.431 kb on + strand, within IAI46_01620at 356.464 kb on - strand, within IAI46_01620at 356.472 kb on - strand, within IAI46_01620at 356.533 kb on + strandat 356.581 kb on + strandat 356.591 kb on + strandat 356.592 kb on - strandat 356.598 kb on + strandat 356.598 kb on + strandat 356.599 kb on - strandat 356.599 kb on - strandat 356.599 kb on - strandat 356.679 kb on + strandat 356.679 kb on + strandat 356.679 kb on + strandat 356.700 kb on + strandat 356.711 kb on + strandat 356.721 kb on - strandat 356.787 kb on + strand, within IAI46_01625at 356.788 kb on - strand, within IAI46_01625at 356.801 kb on + strand, within IAI46_01625at 356.879 kb on + strand, within IAI46_01625at 356.879 kb on + strand, within IAI46_01625at 356.888 kb on + strand, within IAI46_01625at 356.927 kb on + strand, within IAI46_01625at 356.927 kb on + strand, within IAI46_01625at 356.927 kb on + strand, within IAI46_01625at 356.928 kb on - strand, within IAI46_01625at 356.928 kb on - strand, within IAI46_01625at 356.928 kb on - strand, within IAI46_01625at 356.954 kb on + strand, within IAI46_01625at 356.954 kb on + strand, within IAI46_01625at 356.954 kb on + strand, within IAI46_01625at 356.959 kb on - strand, within IAI46_01625at 356.970 kb on - strand, within IAI46_01625at 357.021 kb on + strandat 357.057 kb on - strandat 357.075 kb on + strandat 357.075 kb on + strandat 357.076 kb on - strandat 357.076 kb on - strandat 357.131 kb on + strandat 357.132 kb on - strandat 357.163 kb on + strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.164 kb on - strandat 357.167 kb on + strandat 357.167 kb on + strandat 357.168 kb on - strandat 357.284 kb on + strand, within IAI46_01630at 357.285 kb on - strand, within IAI46_01630at 357.285 kb on - strand, within IAI46_01630at 357.285 kb on - strand, within IAI46_01630at 357.441 kb on + strand, within IAI46_01630at 357.478 kb on + strand, within IAI46_01630at 357.478 kb on + strand, within IAI46_01630at 357.479 kb on - strand, within IAI46_01630at 357.489 kb on + strand, within IAI46_01630at 357.490 kb on - strand, within IAI46_01630at 357.511 kb on + strand, within IAI46_01630at 357.512 kb on - strand, within IAI46_01630at 357.597 kb on + strand, within IAI46_01630

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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354,659 + IAI46_01615 0.46 -0.3
354,659 + IAI46_01615 0.46 +0.1
354,685 - IAI46_01615 0.48 -1.5
354,742 - IAI46_01615 0.51 -0.4
354,751 + IAI46_01615 0.51 +0.9
354,751 + IAI46_01615 0.51 +0.0
354,752 - IAI46_01615 0.51 +0.8
354,752 - IAI46_01615 0.51 -0.4
354,755 + IAI46_01615 0.51 +0.8
354,769 + IAI46_01615 0.52 -0.8
354,770 - IAI46_01615 0.52 +0.7
354,959 + IAI46_01615 0.62 +0.5
355,078 - IAI46_01615 0.69 -0.1
355,235 - IAI46_01615 0.77 +0.6
355,395 + IAI46_01615 0.85 +0.3
355,396 - IAI46_01615 0.86 -0.2
355,401 + IAI46_01615 0.86 -0.4
355,401 + IAI46_01615 0.86 -0.3
355,401 + IAI46_01615 0.86 -0.7
355,401 + IAI46_01615 0.86 +0.3
355,446 + IAI46_01615 0.88 -0.0
355,447 - IAI46_01615 0.88 -0.9
355,447 - IAI46_01615 0.88 -2.6
355,447 - IAI46_01615 0.88 -0.2
355,451 + IAI46_01615 0.88 +0.3
355,489 - +0.1
355,512 + -0.1
355,512 + +0.4
355,551 + +0.5
355,633 - +0.4
355,990 - IAI46_01620 0.35 -0.4
356,015 - IAI46_01620 0.38 +0.1
356,427 + IAI46_01620 0.82 -0.2
356,427 + IAI46_01620 0.82 -1.9
356,427 + IAI46_01620 0.82 +0.4
356,427 + IAI46_01620 0.82 -1.3
356,428 - IAI46_01620 0.82 +0.4
356,431 + IAI46_01620 0.82 -1.7
356,431 + IAI46_01620 0.82 +2.1
356,464 - IAI46_01620 0.85 +0.3
356,472 - IAI46_01620 0.86 +1.1
356,533 + -0.4
356,581 + -0.5
356,591 + +0.4
356,592 - +0.7
356,598 + -0.5
356,598 + -0.2
356,599 - -1.2
356,599 - -0.6
356,599 - -1.7
356,679 + +1.1
356,679 + +0.4
356,679 + +0.1
356,700 + -0.7
356,711 + +1.0
356,721 - -2.0
356,787 + IAI46_01625 0.23 -0.3
356,788 - IAI46_01625 0.24 +1.1
356,801 + IAI46_01625 0.28 -0.3
356,879 + IAI46_01625 0.53 +0.6
356,879 + IAI46_01625 0.53 -0.2
356,888 + IAI46_01625 0.56 -1.3
356,927 + IAI46_01625 0.69 -0.2
356,927 + IAI46_01625 0.69 -0.9
356,927 + IAI46_01625 0.69 -0.8
356,928 - IAI46_01625 0.69 -1.3
356,928 - IAI46_01625 0.69 +1.3
356,928 - IAI46_01625 0.69 -1.3
356,954 + IAI46_01625 0.77 -0.6
356,954 + IAI46_01625 0.77 -0.3
356,954 + IAI46_01625 0.77 +0.5
356,959 - IAI46_01625 0.79 +0.1
356,970 - IAI46_01625 0.83 +0.1
357,021 + -0.3
357,057 - -0.5
357,075 + -0.9
357,075 + +0.4
357,076 - +0.4
357,076 - -1.0
357,131 + -0.4
357,132 - -0.3
357,163 + -1.1
357,164 - +0.1
357,164 - +1.8
357,164 - -0.5
357,164 - +0.3
357,164 - +2.7
357,164 - -0.2
357,164 - +0.3
357,164 - -0.8
357,167 + -0.2
357,167 + +0.0
357,168 - -0.1
357,284 + IAI46_01630 0.13 +0.5
357,285 - IAI46_01630 0.13 +0.6
357,285 - IAI46_01630 0.13 -0.9
357,285 - IAI46_01630 0.13 +0.1
357,441 + IAI46_01630 0.25 +0.6
357,478 + IAI46_01630 0.28 +1.4
357,478 + IAI46_01630 0.28 -0.5
357,479 - IAI46_01630 0.28 +0.2
357,489 + IAI46_01630 0.29 +0.2
357,490 - IAI46_01630 0.29 +0.8
357,511 + IAI46_01630 0.31 -0.0
357,512 - IAI46_01630 0.31 -1.1
357,597 + IAI46_01630 0.37 -1.4

Or see this region's nucleotide sequence