Strain Fitness in Serratia liquefaciens MT49 around IAI46_01595

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01575 and IAI46_01580 are separated by 204 nucleotidesIAI46_01580 and IAI46_01585 are separated by 64 nucleotidesIAI46_01585 and IAI46_01590 are separated by 55 nucleotidesIAI46_01590 and IAI46_01595 are separated by 299 nucleotidesIAI46_01595 and IAI46_01600 overlap by 2 nucleotides IAI46_01575: IAI46_01575 - oligoribonuclease, at 347,431 to 347,976 _01575 IAI46_01580: IAI46_01580 - tRNA-Gly, at 348,181 to 348,256 _01580 IAI46_01585: IAI46_01585 - tRNA-Gly, at 348,321 to 348,396 _01585 IAI46_01590: IAI46_01590 - tRNA-Gly, at 348,452 to 348,527 _01590 IAI46_01595: IAI46_01595 - tRNA epoxyqueuosine(34) reductase QueG, at 348,827 to 349,966 _01595 IAI46_01600: IAI46_01600 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 349,965 to 351,476 _01600 Position (kb) 348 349 350Strain fitness (log2 ratio) -1 0 1 2at 347.972 kb on + strandat 347.973 kb on - strandat 348.006 kb on - strandat 348.006 kb on - strandat 348.035 kb on - strandat 348.039 kb on - strandat 348.158 kb on + strandat 348.290 kb on + strandat 348.306 kb on + strandat 348.306 kb on + strandat 348.306 kb on + strandat 348.309 kb on + strandat 348.309 kb on + strandat 348.589 kb on + strandat 348.589 kb on + strandat 348.589 kb on + strandat 348.589 kb on + strandat 348.589 kb on + strandat 348.589 kb on + strandat 348.590 kb on - strandat 348.590 kb on - strandat 348.590 kb on - strandat 348.590 kb on - strandat 348.590 kb on - strandat 348.590 kb on - strandat 348.593 kb on + strandat 348.593 kb on + strandat 348.594 kb on - strandat 348.594 kb on - strandat 348.640 kb on + strandat 348.641 kb on - strandat 348.896 kb on + strandat 348.896 kb on + strandat 348.896 kb on + strandat 348.897 kb on - strandat 348.897 kb on - strandat 348.897 kb on - strandat 348.946 kb on + strand, within IAI46_01595at 348.946 kb on + strand, within IAI46_01595at 349.056 kb on - strand, within IAI46_01595at 349.213 kb on + strand, within IAI46_01595at 349.213 kb on + strand, within IAI46_01595at 349.214 kb on - strand, within IAI46_01595at 349.214 kb on - strand, within IAI46_01595at 349.236 kb on + strand, within IAI46_01595at 349.254 kb on - strand, within IAI46_01595at 349.309 kb on + strand, within IAI46_01595at 349.309 kb on + strand, within IAI46_01595at 349.310 kb on - strand, within IAI46_01595at 349.325 kb on + strand, within IAI46_01595at 349.326 kb on - strand, within IAI46_01595at 349.363 kb on + strand, within IAI46_01595at 349.364 kb on - strand, within IAI46_01595at 349.364 kb on - strand, within IAI46_01595at 349.364 kb on - strand, within IAI46_01595at 349.369 kb on + strand, within IAI46_01595at 349.369 kb on + strand, within IAI46_01595at 349.409 kb on - strand, within IAI46_01595at 349.638 kb on + strand, within IAI46_01595at 349.657 kb on - strand, within IAI46_01595at 349.673 kb on + strand, within IAI46_01595at 349.673 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.723 kb on - strand, within IAI46_01595at 349.825 kb on - strand, within IAI46_01595at 349.825 kb on - strand, within IAI46_01595at 349.889 kb on + strandat 349.890 kb on - strandat 349.890 kb on - strandat 349.890 kb on - strandat 349.890 kb on - strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.928 kb on - strandat 349.928 kb on - strandat 349.928 kb on - strandat 349.928 kb on - strandat 349.928 kb on - strandat 350.079 kb on + strandat 350.193 kb on + strand, within IAI46_01600at 350.193 kb on + strand, within IAI46_01600at 350.194 kb on - strand, within IAI46_01600at 350.457 kb on - strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.532 kb on - strand, within IAI46_01600at 350.532 kb on - strand, within IAI46_01600at 350.609 kb on + strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.615 kb on - strand, within IAI46_01600at 350.715 kb on - strand, within IAI46_01600at 350.715 kb on - strand, within IAI46_01600

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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347,972 + -1.0
347,973 - +0.1
348,006 - +0.3
348,006 - +0.0
348,035 - +0.4
348,039 - +0.7
348,158 + +0.1
348,290 + -1.0
348,306 + -1.2
348,306 + -0.7
348,306 + -1.6
348,309 + -0.5
348,309 + -0.5
348,589 + +0.3
348,589 + -0.4
348,589 + +0.7
348,589 + -0.3
348,589 + -0.1
348,589 + +0.1
348,590 - -0.9
348,590 - -0.5
348,590 - -1.1
348,590 - +0.4
348,590 - -1.1
348,590 - -0.0
348,593 + -0.3
348,593 + -0.2
348,594 - +0.6
348,594 - +0.5
348,640 + +0.7
348,641 - +0.4
348,896 + +1.9
348,896 + +0.1
348,896 + -0.7
348,897 - -1.5
348,897 - +0.9
348,897 - +0.6
348,946 + IAI46_01595 0.10 +1.3
348,946 + IAI46_01595 0.10 -0.2
349,056 - IAI46_01595 0.20 -0.3
349,213 + IAI46_01595 0.34 +0.1
349,213 + IAI46_01595 0.34 +0.7
349,214 - IAI46_01595 0.34 +0.4
349,214 - IAI46_01595 0.34 +0.2
349,236 + IAI46_01595 0.36 +0.6
349,254 - IAI46_01595 0.37 +0.1
349,309 + IAI46_01595 0.42 -0.0
349,309 + IAI46_01595 0.42 -0.9
349,310 - IAI46_01595 0.42 -0.0
349,325 + IAI46_01595 0.44 -0.4
349,326 - IAI46_01595 0.44 +0.6
349,363 + IAI46_01595 0.47 +0.4
349,364 - IAI46_01595 0.47 +0.5
349,364 - IAI46_01595 0.47 -0.4
349,364 - IAI46_01595 0.47 -0.3
349,369 + IAI46_01595 0.48 +0.2
349,369 + IAI46_01595 0.48 -0.1
349,409 - IAI46_01595 0.51 +1.1
349,638 + IAI46_01595 0.71 -0.5
349,657 - IAI46_01595 0.73 +1.7
349,673 + IAI46_01595 0.74 +0.4
349,673 + IAI46_01595 0.74 +0.3
349,722 + IAI46_01595 0.79 -0.8
349,722 + IAI46_01595 0.79 +0.2
349,722 + IAI46_01595 0.79 -0.2
349,722 + IAI46_01595 0.79 -0.8
349,723 - IAI46_01595 0.79 -0.5
349,825 - IAI46_01595 0.88 +0.3
349,825 - IAI46_01595 0.88 -0.8
349,889 + -0.0
349,890 - -0.8
349,890 - +0.2
349,890 - -0.1
349,890 - +0.1
349,927 + +0.9
349,927 + -0.2
349,927 + +0.4
349,927 + -0.1
349,927 + -1.6
349,928 - -1.7
349,928 - +0.7
349,928 - -0.0
349,928 - +0.0
349,928 - +0.0
350,079 + +0.3
350,193 + IAI46_01600 0.15 +0.6
350,193 + IAI46_01600 0.15 -0.1
350,194 - IAI46_01600 0.15 -0.3
350,457 - IAI46_01600 0.33 -0.0
350,531 + IAI46_01600 0.37 +0.1
350,531 + IAI46_01600 0.37 +1.5
350,531 + IAI46_01600 0.37 +0.1
350,532 - IAI46_01600 0.38 +0.8
350,532 - IAI46_01600 0.38 +0.9
350,609 + IAI46_01600 0.43 +0.3
350,610 - IAI46_01600 0.43 +0.3
350,610 - IAI46_01600 0.43 +1.0
350,610 - IAI46_01600 0.43 +0.7
350,615 - IAI46_01600 0.43 +0.2
350,715 - IAI46_01600 0.50 -0.2
350,715 - IAI46_01600 0.50 -0.2

Or see this region's nucleotide sequence